Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   H9Q14_RS06640 Genome accession   NZ_CP060794
Coordinates   1373847..1374422 (+) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0260     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1374823..1380524 1373847..1374422 flank 401


Gene organization within MGE regions


Location: 1373847..1380524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q14_RS06640 comK/comK1 1373847..1374422 (+) 576 WP_001829272.1 competence protein ComK Regulator
  H9Q14_RS06655 - 1374823..1375872 (-) 1050 WP_047511974.1 site-specific integrase -
  H9Q14_RS06660 - 1376051..1377034 (-) 984 WP_002499273.1 DUF3644 domain-containing protein -
  H9Q14_RS06665 - 1377076..1377480 (-) 405 WP_002499272.1 sporulation protein -
  H9Q14_RS06670 - 1377563..1377733 (-) 171 WP_187703559.1 hypothetical protein -
  H9Q14_RS06675 - 1377918..1379057 (-) 1140 WP_002499270.1 CapA family protein -
  H9Q14_RS06680 - 1379079..1379246 (-) 168 WP_012099457.1 hypothetical protein -
  H9Q14_RS06685 - 1379291..1379917 (-) 627 WP_012099455.1 XRE family transcriptional regulator -
  H9Q14_RS06690 - 1380069..1380296 (+) 228 WP_012099453.1 helix-turn-helix transcriptional regulator -
  H9Q14_RS06695 - 1380357..1380524 (+) 168 WP_012099450.1 hypothetical protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=478373 H9Q14_RS06640 WP_001829272.1 1373847..1374422(+) (comK/comK1) [Staphylococcus epidermidis strain Z0118SE0260]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=478373 H9Q14_RS06640 WP_001829272.1 1373847..1374422(+) (comK/comK1) [Staphylococcus epidermidis strain Z0118SE0260]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743