Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   J3R87_RS03975 Genome accession   NZ_CP071594
Coordinates   778887..779999 (+) Length   370 a.a.
NCBI ID   WP_213674523.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PNID0137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 773887..784999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R87_RS03950 (J3R87_03950) rnpA 774150..774503 (-) 354 WP_001789343.1 ribonuclease P protein component -
  J3R87_RS03955 (J3R87_03955) rpmH 774624..774761 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  J3R87_RS03960 (J3R87_03960) dnaA 775492..776853 (+) 1362 WP_001290430.1 chromosomal replication initiator protein DnaA -
  J3R87_RS03965 (J3R87_03965) dnaN 777131..778264 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  J3R87_RS03970 (J3R87_03970) yaaA 778645..778890 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  J3R87_RS03975 (J3R87_03975) recF 778887..779999 (+) 1113 WP_213674523.1 DNA replication/repair protein RecF Machinery gene
  J3R87_RS03980 (J3R87_03980) gyrB 780009..781943 (+) 1935 WP_000255583.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  J3R87_RS03985 (J3R87_03985) gyrA 781980..784640 (+) 2661 WP_000819098.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42414.45 Da        Isoelectric Point: 6.5805

>NTDB_id=478252 J3R87_RS03975 WP_213674523.1 778887..779999(+) (recF) [Staphylococcus aureus strain PNID0137]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNNLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=478252 J3R87_RS03975 WP_213674523.1 778887..779999(+) (recF) [Staphylococcus aureus strain PNID0137]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATAATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAACAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.062

100

0.495