Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBB_RS15430 Genome accession   NC_017505
Coordinates   2109988..2110362 (-) Length   124 a.a.
NCBI ID   WP_238525273.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104988..2115362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS10850 (NMBB_2310) - 2105543..2107150 (+) 1608 WP_002258744.1 AAA family ATPase -
  NMBB_RS10855 (NMBB_2311) - 2107141..2108601 (+) 1461 WP_014575600.1 VWA domain-containing protein -
  NMBB_RS10860 (NMBB_2312) - 2108754..2108909 (+) 156 WP_180300025.1 hypothetical protein -
  NMBB_RS10870 (NMBB_2312B) comP 2109451..2109900 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMBB_RS15430 (NMBB_2313) comE 2109988..2110362 (-) 375 WP_238525273.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13330.10 Da        Isoelectric Point: 11.0770

>NTDB_id=47814 NMBB_RS15430 WP_238525273.1 2109988..2110362(-) (comE) [Neisseria meningitidis alpha710]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 375 bp        

>NTDB_id=47814 NMBB_RS15430 WP_238525273.1 2109988..2110362(-) (comE) [Neisseria meningitidis alpha710]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGGCTTCGGTCGG
TGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

68.852

98.387

0.677
  comE Neisseria gonorrhoeae MS11

68.852

98.387

0.677
  comE Neisseria gonorrhoeae MS11

68.852

98.387

0.677
  comE Neisseria gonorrhoeae MS11

68.852

98.387

0.677

Multiple sequence alignment