Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBB_RS14725 Genome accession   NC_017505
Coordinates   61491..61955 (+) Length   154 a.a.
NCBI ID   WP_025169210.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 56491..66955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS14725 comE 61491..61955 (+) 465 WP_025169210.1 ComEA family DNA-binding protein Machinery gene
  NMBB_RS14730 - 62357..62599 (+) 243 WP_025458506.1 hypothetical protein -
  NMBB_RS14735 (NMBB_0064) - 62619..62783 (-) 165 WP_153310013.1 hypothetical protein -
  NMBB_RS00345 (NMBB_0065) dnaJ 63117..64238 (+) 1122 WP_002218502.1 molecular chaperone DnaJ -
  NMBB_RS00350 (NMBB_0066) - 64434..66452 (+) 2019 WP_002218503.1 oligopeptide transporter, OPT family -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16478.76 Da        Isoelectric Point: 10.9585

>NTDB_id=47811 NMBB_RS14725 WP_025169210.1 61491..61955(+) (comE) [Neisseria meningitidis alpha710]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47811 NMBB_RS14725 WP_025169210.1 61491..61955(+) (comE) [Neisseria meningitidis alpha710]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGTATCGGCCCCGCGGTGCTGGCAAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCCAAAGCCCCCGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721

Multiple sequence alignment