Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H9L16_RS08135 Genome accession   NZ_CP060719
Coordinates   1775519..1776934 (-) Length   471 a.a.
NCBI ID   WP_187551237.1    Uniprot ID   A0A7G9SLJ8
Organism   Thermomonas carbonis strain KCTC 42013     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770519..1781934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L16_RS08115 (H9L16_08115) - 1772104..1773597 (-) 1494 WP_325065077.1 NAD(P)/FAD-dependent oxidoreductase -
  H9L16_RS16390 - 1773583..1773675 (-) 93 Protein_1607 hypothetical protein -
  H9L16_RS08120 (H9L16_08120) - 1773642..1774085 (-) 444 WP_187551234.1 GtrA family protein -
  H9L16_RS16395 - 1774281..1774637 (-) 357 WP_308427066.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H9L16_RS15995 - 1775150..1775239 (-) 90 Protein_1610 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H9L16_RS08135 (H9L16_08135) pilR 1775519..1776934 (-) 1416 WP_187551237.1 sigma-54 dependent transcriptional regulator Regulator
  H9L16_RS08140 (H9L16_08140) - 1777009..1778607 (-) 1599 WP_187551239.1 ATP-binding protein -
  H9L16_RS08145 (H9L16_08145) sucC 1778765..1779931 (+) 1167 WP_187551241.1 ADP-forming succinate--CoA ligase subunit beta -
  H9L16_RS08150 (H9L16_08150) sucD 1779943..1780818 (+) 876 WP_187551243.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50837.41 Da        Isoelectric Point: 7.2388

>NTDB_id=478019 H9L16_RS08135 WP_187551237.1 1775519..1776934(-) (pilR) [Thermomonas carbonis strain KCTC 42013]
MSAPARNTQACALVVDDERDIRELLVLTLGRMGLKCDTASSLHDARALLRHNTYALCLTDMRLTDGSGLDLVREISQLYP
QTPVAMITAFGNQEAAVGALKAGAFDFVSKPVDLSVLRGLVQHALKLGLEASAGGASRLADAAGPAMARLLGSSMAMADL
RTTLAKVARSQAPIYIAGESGVGKELVARTIHDEGMRAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQA
AEGGTLFLDEVAELPLPMQVKLLRAIQEKSVRPVGANGEVPVDVRILSATHKNLAALVEDGRFRHDLYYRINVIELRVPP
LRDRREDVAQLTDAILARLANAQHRAKPVLHADALEALARYNFPGNVRELENILERAFALADDDGIRAADLRLPEMRPSA
PAQAAAAAMDPSRIDPRESATSALPNFIEEIERKAIEQALTDNRYNKTRAAAQLGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=478019 H9L16_RS08135 WP_187551237.1 1775519..1776934(-) (pilR) [Thermomonas carbonis strain KCTC 42013]
ATGAGCGCCCCTGCCCGCAACACCCAAGCCTGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAATTACTGGTCCT
GACGCTCGGACGGATGGGGTTGAAGTGCGATACCGCCTCGTCCCTGCATGACGCTCGGGCACTGCTTCGCCACAACACCT
ATGCGCTGTGCCTGACCGACATGCGGCTGACCGACGGTTCCGGGCTGGATCTGGTGCGCGAAATTTCCCAGCTGTACCCG
CAGACCCCGGTCGCGATGATCACCGCCTTCGGCAATCAGGAAGCGGCCGTCGGCGCGCTCAAGGCCGGCGCGTTCGATTT
CGTCAGCAAGCCGGTGGATTTGTCGGTGCTGCGCGGCTTGGTCCAGCACGCGCTGAAACTGGGCCTGGAGGCCTCCGCTG
GCGGTGCATCCCGGCTCGCCGACGCCGCCGGGCCAGCCATGGCCCGCCTGCTGGGCAGCTCGATGGCCATGGCCGACCTG
CGCACGACCCTCGCCAAGGTCGCCCGCAGCCAAGCGCCGATCTACATCGCCGGCGAGTCGGGCGTGGGCAAGGAACTTGT
GGCGCGGACCATCCATGACGAGGGCATGCGCGCCGCCGGACCATTCGTGCCGGTGAACTGCGGCGCAATTCCCGCGGAAT
TGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCCCATGCCGACAAACCCGGCCTGTTCCAGGCG
GCCGAAGGCGGCACCCTCTTTCTGGACGAAGTGGCCGAGTTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCA
GGAAAAATCGGTGCGTCCCGTCGGTGCCAATGGAGAAGTGCCGGTGGACGTGCGCATCCTCTCGGCGACCCACAAGAACC
TGGCGGCACTGGTCGAGGACGGCCGCTTCCGCCACGACCTGTACTACCGCATCAACGTCATAGAGCTTCGCGTACCGCCA
TTGCGCGACCGACGCGAGGACGTGGCGCAACTCACCGACGCCATACTCGCCCGCCTGGCCAACGCCCAGCACCGCGCGAA
ACCGGTCCTGCATGCGGATGCCCTGGAGGCACTGGCCCGCTACAACTTCCCCGGCAATGTGCGCGAACTGGAGAACATCC
TGGAGCGTGCCTTCGCCTTGGCCGACGACGACGGCATCCGCGCCGCCGACCTGCGGCTGCCGGAAATGCGCCCCAGCGCA
CCCGCGCAAGCCGCCGCCGCCGCGATGGACCCGTCCCGGATCGATCCGCGCGAGTCCGCCACCAGCGCCCTGCCGAACTT
CATCGAGGAAATCGAGCGCAAGGCGATCGAGCAGGCCCTGACCGACAACCGCTACAACAAGACCCGCGCCGCCGCGCAGC
TCGGCATCACCTTCCGCGCGCTGCGGTACAAGCTGAAGAAACTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-119)

Sigma-54 interaction domain (Sigma54_activat)

(151-316)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9SLJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.388

97.877

0.601
  pilR Acinetobacter baumannii strain A118

47.009

99.363

0.467