Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVT00_RS06580 Genome accession   NZ_CP060707
Coordinates   1303963..1304733 (-) Length   256 a.a.
NCBI ID   WP_107914890.1    Uniprot ID   A0A7S9RCT4
Organism   Campylobacter concisus strain P1CDO2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1298963..1309733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT00_RS06550 (CVT00_06550) hemW 1299515..1300561 (+) 1047 WP_103559132.1 radical SAM family heme chaperone HemW -
  CVT00_RS06555 (CVT00_06555) tatB 1300629..1301027 (+) 399 WP_012140063.1 Sec-independent protein translocase protein TatB -
  CVT00_RS06560 (CVT00_06560) tatC 1301027..1301782 (+) 756 WP_107914896.1 twin-arginine translocase subunit TatC -
  CVT00_RS06565 (CVT00_06565) queA 1301775..1302797 (+) 1023 WP_107915013.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CVT00_RS06570 (CVT00_06570) - 1302794..1303588 (+) 795 WP_107914894.1 hypothetical protein -
  CVT00_RS06575 (CVT00_06575) ruvX 1303583..1303966 (-) 384 WP_107914892.1 Holliday junction resolvase RuvX -
  CVT00_RS06580 (CVT00_06580) dprA 1303963..1304733 (-) 771 WP_107914890.1 DNA-processing protein DprA Machinery gene
  CVT00_RS06585 (CVT00_06585) - 1304730..1306178 (-) 1449 WP_107914888.1 divergent polysaccharide deacetylase family protein -
  CVT00_RS06590 (CVT00_06590) ilvC 1306182..1307204 (-) 1023 WP_107914886.1 ketol-acid reductoisomerase -
  CVT00_RS06595 (CVT00_06595) - 1307352..1308170 (+) 819 WP_103567760.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27904.32 Da        Isoelectric Point: 6.0519

>NTDB_id=477887 CVT00_RS06580 WP_107914890.1 1303963..1304733(-) (dprA) [Campylobacter concisus strain P1CDO2]
MKLEIIPEALNRLKNPPKELNFIGDTSLLSMPKVAVVGSRKASAYTKECVTALCVALKNANVCVVSGGAIGVDITAHKAA
MPRTIGVFANGLDIIYPAQNRASIKEIYEKGLALSEYDDGEPPIAYRFLERNRIVVGLAQALVVAQADLRSGSMQSARLA
NELKIPLFVLPQRINESNGTNALLASKKAELIDDYVKFASLFGEVKEQEKTSDEILKFCKNGVNLDEALSKFGEIIYEYE
LDGLVEISNLRVKSAL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=477887 CVT00_RS06580 WP_107914890.1 1303963..1304733(-) (dprA) [Campylobacter concisus strain P1CDO2]
ATGAAGCTTGAAATCATCCCAGAGGCGCTAAATAGGCTAAAAAATCCCCCAAAAGAGCTAAATTTCATAGGCGACACTTC
GCTTCTTAGCATGCCAAAAGTAGCAGTCGTTGGCTCAAGAAAGGCAAGTGCCTATACAAAAGAGTGCGTCACGGCACTTT
GCGTAGCGCTAAAAAATGCAAATGTCTGCGTCGTAAGTGGTGGGGCTATCGGTGTGGATATCACAGCTCATAAAGCCGCC
ATGCCACGAACTATCGGTGTTTTTGCAAATGGACTTGATATCATCTATCCAGCTCAAAATAGGGCATCGATAAAAGAAAT
TTATGAAAAAGGCTTGGCTCTAAGCGAGTATGACGATGGCGAGCCACCGATCGCTTATAGGTTTTTAGAGCGAAACCGCA
TAGTTGTGGGGCTTGCACAAGCTCTGGTTGTCGCACAAGCTGATCTAAGAAGCGGCTCTATGCAAAGTGCGAGGCTAGCA
AATGAGCTTAAAATCCCTCTCTTTGTCCTGCCTCAGCGCATAAATGAGAGCAATGGGACAAATGCTTTACTGGCTAGCAA
AAAGGCCGAGCTTATCGATGATTACGTTAAATTTGCTTCGCTTTTTGGCGAGGTAAAAGAGCAAGAAAAAACAAGCGATG
AGATCTTGAAATTTTGCAAAAACGGAGTTAATCTTGATGAAGCATTGTCTAAATTTGGTGAGATCATCTATGAATACGAG
CTTGACGGGCTAGTTGAAATTTCAAATTTAAGAGTAAAAAGCGCGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9RCT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.223

91.016

0.512
  dprA Helicobacter pylori 26695

45.02

98.047

0.441