Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVT08_RS03230 Genome accession   NZ_CP060705
Coordinates   660133..660903 (+) Length   256 a.a.
NCBI ID   WP_107856443.1    Uniprot ID   A0A7S9WX04
Organism   Campylobacter concisus strain P13UCO-S1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 655133..665903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT08_RS03215 (CVT08_03215) - 656696..657514 (-) 819 WP_012140069.1 HDOD domain-containing protein -
  CVT08_RS03220 (CVT08_03220) ilvC 657662..658684 (+) 1023 WP_103602629.1 ketol-acid reductoisomerase -
  CVT08_RS03225 (CVT08_03225) - 658688..660136 (+) 1449 WP_107856442.1 divergent polysaccharide deacetylase family protein -
  CVT08_RS03230 (CVT08_03230) dprA 660133..660903 (+) 771 WP_107856443.1 DNA-processing protein DprA Machinery gene
  CVT08_RS03235 (CVT08_03235) ruvX 660900..661283 (+) 384 WP_107856444.1 Holliday junction resolvase RuvX -
  CVT08_RS03240 (CVT08_03240) - 661278..662072 (-) 795 WP_103598631.1 hypothetical protein -
  CVT08_RS03245 (CVT08_03245) queA 662069..663091 (-) 1023 WP_196381034.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CVT08_RS03250 (CVT08_03250) tatC 663084..663857 (-) 774 WP_107856445.1 twin-arginine translocase subunit TatC -
  CVT08_RS03255 (CVT08_03255) tatB 663857..664255 (-) 399 WP_012140063.1 Sec-independent protein translocase protein TatB -
  CVT08_RS03260 (CVT08_03260) hemW 664323..665369 (-) 1047 WP_107856446.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27921.35 Da        Isoelectric Point: 6.0551

>NTDB_id=477874 CVT08_RS03230 WP_107856443.1 660133..660903(+) (dprA) [Campylobacter concisus strain P13UCO-S1]
MKLEIIPEALNRLKNPPKELNFIGDTSLLSMPKVAVVGSRKASVYTKECVTALCAALKNANVCVVSGGAIGVDITAHKAA
MPRTIGVFANGLDIIYPAQNRTSIKEIYEKGLALSEYDEGEPPIAYRFLERNRIVVGLAQALVVAQADLRSGSMQSARLA
NELKIPLFVLPQRINESNGTNALLASKKAELIDDYVKFASLFGEVKEQEKTSDEILKFCKNGVSLDEALSKFGEIIYEYE
LDGLVEISNLRVKSAL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=477874 CVT08_RS03230 WP_107856443.1 660133..660903(+) (dprA) [Campylobacter concisus strain P13UCO-S1]
ATGAAGCTTGAAATCATCCCAGAGGCGCTAAATAGGCTAAAAAATCCCCCAAAAGAGCTAAATTTCATAGGTGACACCTC
GCTTCTTAGCATGCCAAAAGTAGCAGTCGTTGGATCAAGAAAGGCAAGTGTCTATACAAAAGAGTGCGTCACGGCACTTT
GCGCAGCGCTAAAAAATGCAAATGTCTGCGTGGTGAGTGGTGGGGCTATCGGTGTGGATATCACAGCTCATAAAGCCGCC
ATGCCACGAACTATCGGTGTTTTTGCAAATGGACTTGATATCATCTATCCAGCTCAAAATAGGACGTCGATAAAAGAAAT
TTATGAAAAAGGCTTGGCTCTAAGCGAGTATGACGAGGGCGAGCCACCGATCGCTTATAGGTTTTTAGAGCGAAACCGCA
TAGTTGTGGGGCTTGCGCAAGCTCTGGTTGTCGCTCAGGCTGATCTAAGAAGCGGCTCTATGCAAAGCGCAAGGCTTGCA
AATGAGCTTAAAATCCCTCTCTTTGTCCTGCCGCAGCGCATAAATGAGAGCAATGGGACAAATGCCTTGCTAGCTAGTAA
AAAGGCCGAGCTTATCGATGATTACGTCAAATTTGCCTCGCTTTTTGGTGAGGTAAAAGAGCAAGAAAAAACAAGCGATG
AGATCTTGAAATTTTGCAAAAACGGAGTTAGCCTTGATGAGGCATTGTCTAAATTTGGCGAGATCATCTACGAGTACGAG
CTTGATGGGCTAGTTGAAATTTCAAATTTAAGAGTAAAAAGCGCGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9WX04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.652

91.016

0.516
  dprA Helicobacter pylori 26695

45.418

98.047

0.445