Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVT08_RS02385 Genome accession   NZ_CP060705
Coordinates   486242..487195 (-) Length   317 a.a.
NCBI ID   WP_107856600.1    Uniprot ID   A0A7S9RQM4
Organism   Campylobacter concisus strain P13UCO-S1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 481242..492195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT08_RS02360 (CVT08_02360) - 483274..483981 (+) 708 WP_107856597.1 DUF6882 domain-containing protein -
  CVT08_RS02365 (CVT08_02365) - 483967..484860 (-) 894 WP_107856598.1 glutamate--tRNA ligase family protein -
  CVT08_RS02370 (CVT08_02370) - 484838..485083 (-) 246 WP_103652043.1 RNA-binding protein -
  CVT08_RS02375 (CVT08_02375) - 485308..485859 (-) 552 WP_107856599.1 DJ-1 family glyoxalase III -
  CVT08_RS02380 (CVT08_02380) - 485941..486198 (+) 258 WP_258031597.1 SelT/SelW/SelH family (seleno)protein -
  CVT08_RS02385 (CVT08_02385) waaF 486242..487195 (-) 954 WP_107856600.1 lipopolysaccharide heptosyltransferase II Regulator
  CVT08_RS02390 (CVT08_02390) - 487192..488223 (-) 1032 WP_107856601.1 glycosyltransferase family 4 protein -
  CVT08_RS02395 (CVT08_02395) - 488355..489290 (+) 936 WP_107856602.1 glycosyltransferase family 9 protein -
  CVT08_RS02400 (CVT08_02400) - 489253..490566 (+) 1314 WP_107856603.1 O-antigen ligase family protein -
  CVT08_RS02405 (CVT08_02405) - 490550..490816 (+) 267 WP_103598746.1 glycosyltransferase -
  CVT08_RS02410 (CVT08_02410) - 490803..491876 (+) 1074 WP_107856604.1 glycosyltransferase family 9 protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35416.56 Da        Isoelectric Point: 9.9407

>NTDB_id=477873 CVT08_RS02385 WP_107856600.1 486242..487195(-) (waaF) [Campylobacter concisus strain P13UCO-S1]
MRVFIELPTWLGDSVMASAAIENLVQNEKNLQIVFFGSFVACELYKNQPNCEKVVVDESKKAKFRFLSLTKSAKNLGKFD
LALSFRSSFASKFLLFFINAKKKAIFKKSKTVLHQVLKYANFVKNALGLGEISTQLKLHFTPQISAKKTLALNPGASYGS
AKRWYPEYFAQVALNFKNEFEIVIFGGKGEQEICEKIEQILKENGATCQNLAGKTSVKELCERIAGLSKNGIFVTNDSGP
MHIAAAFHVPTIALFGPTKFSETSPWGNEFAKIVHLNLACMPCMKRVCPLKTHACMRELKPQMVIDEINLLRKESGI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=477873 CVT08_RS02385 WP_107856600.1 486242..487195(-) (waaF) [Campylobacter concisus strain P13UCO-S1]
ATGAGAGTTTTTATCGAGCTTCCAACCTGGCTTGGCGATAGCGTAATGGCAAGCGCTGCGATAGAAAATTTAGTGCAAAA
TGAGAAAAATTTACAAATCGTTTTTTTTGGCTCATTCGTAGCCTGCGAGCTTTACAAAAACCAACCAAACTGCGAAAAAG
TGGTTGTTGATGAGAGTAAAAAAGCTAAATTTAGGTTTTTATCTCTTACAAAAAGTGCAAAAAATCTTGGTAAATTTGAT
CTAGCGCTTAGCTTTAGGAGCTCATTTGCTAGTAAATTTTTGCTATTTTTTATAAATGCTAAGAAAAAAGCCATATTTAA
AAAGAGTAAAACCGTCCTTCATCAGGTGCTAAAATATGCAAATTTTGTAAAAAATGCCCTTGGCTTGGGCGAAATTTCCA
CTCAGCTAAAGTTACATTTTACACCTCAAATTTCAGCCAAAAAAACACTAGCTCTAAATCCAGGTGCGAGCTACGGAAGT
GCGAAAAGATGGTATCCAGAGTATTTTGCGCAGGTGGCGCTAAATTTCAAAAATGAGTTTGAGATAGTCATCTTTGGTGG
CAAAGGCGAGCAAGAAATTTGCGAAAAAATTGAGCAAATTTTAAAAGAAAACGGCGCAACTTGCCAGAATTTAGCTGGCA
AAACAAGCGTTAAAGAGCTTTGTGAGCGCATAGCTGGGCTTAGCAAAAATGGCATTTTCGTCACAAACGATAGCGGCCCT
ATGCACATAGCTGCCGCATTTCATGTGCCAACAATCGCTCTTTTTGGACCGACAAAATTTAGCGAAACCTCGCCATGGGG
CAATGAATTTGCAAAGATAGTGCATCTAAATTTAGCTTGCATGCCCTGTATGAAGCGAGTTTGCCCACTAAAAACGCATG
CTTGCATGAGAGAGCTAAAACCCCAAATGGTGATAGATGAGATAAATTTATTAAGAAAAGAGAGTGGGATTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(113-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9RQM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.541

100

0.511