Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H9L41_RS22410 Genome accession   NZ_CP060704
Coordinates   5259209..5259592 (+) Length   127 a.a.
NCBI ID   WP_028447566.1    Uniprot ID   -
Organism   Chitinimonas koreensis strain R2A43-10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5254209..5264592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L41_RS22395 (H9L41_22395) - 5255283..5257310 (-) 2028 WP_211236917.1 cytochrome c biogenesis protein ResB -
  H9L41_RS22400 (H9L41_22400) - 5257388..5258008 (-) 621 WP_028447568.1 cytochrome c -
  H9L41_RS22405 (H9L41_22405) yihA 5258186..5258824 (+) 639 WP_028447567.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  H9L41_RS22410 (H9L41_22410) pilG 5259209..5259592 (+) 384 WP_028447566.1 twitching motility response regulator PilG Regulator
  H9L41_RS22415 (H9L41_22415) - 5259622..5259981 (+) 360 WP_187523921.1 PleD family two-component system response regulator -
  H9L41_RS22420 (H9L41_22420) - 5260049..5260522 (+) 474 WP_051319308.1 chemotaxis protein CheW -
  H9L41_RS25295 - 5260610..5260813 (+) 204 WP_265583879.1 hypothetical protein -
  H9L41_RS22425 (H9L41_22425) - 5260828..5262822 (+) 1995 WP_265583880.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13967.12 Da        Isoelectric Point: 6.8611

>NTDB_id=477867 H9L41_RS22410 WP_028447566.1 5259209..5259592(+) (pilG) [Chitinimonas koreensis strain R2A43-10]
MQNLAGIKVMVIDDSNTIRRSAEIFLGQAGCEVILAEDGFDALAKISDHHPDVIFVDVMMPRLDGYQTCSLIKKNPRFKS
TPVIMLSSKDGLFDRARGRMVGSDEYLTKPFTKDSLLQAVGAHATHA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=477867 H9L41_RS22410 WP_028447566.1 5259209..5259592(+) (pilG) [Chitinimonas koreensis strain R2A43-10]
ATGCAGAATCTCGCCGGCATCAAGGTCATGGTGATCGACGACAGCAATACCATCCGCCGCAGCGCCGAGATCTTCCTCGG
CCAGGCGGGCTGCGAGGTCATCCTGGCCGAAGACGGCTTCGATGCGCTAGCCAAGATCAGCGACCATCATCCCGACGTGA
TCTTCGTCGACGTGATGATGCCGCGGCTAGACGGGTACCAGACCTGTTCGCTGATCAAGAAGAATCCGCGGTTCAAATCC
ACGCCGGTGATCATGCTGTCGTCCAAGGACGGCCTGTTCGACCGCGCGCGCGGCCGCATGGTCGGCTCGGACGAATATCT
GACCAAACCTTTTACCAAGGACAGCCTGCTGCAAGCGGTGGGCGCCCATGCAACTCACGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.667

94.488

0.63
  vicR Streptococcus mutans UA159

39.655

91.339

0.362