Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H9L41_RS18555 Genome accession   NZ_CP060704
Coordinates   4421553..4422344 (+) Length   263 a.a.
NCBI ID   WP_028445147.1    Uniprot ID   -
Organism   Chitinimonas koreensis strain R2A43-10     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 4416553..4427344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L41_RS18530 (H9L41_18530) - 4417129..4418403 (+) 1275 WP_028445152.1 FtsX-like permease family protein -
  H9L41_RS18535 (H9L41_18535) - 4418429..4418689 (+) 261 WP_028445151.1 PepSY domain-containing protein -
  H9L41_RS18540 (H9L41_18540) - 4418880..4419377 (+) 498 WP_028445150.1 DUF3299 domain-containing protein -
  H9L41_RS18545 (H9L41_18545) pgeF 4419525..4420322 (-) 798 WP_373278937.1 peptidoglycan editing factor PgeF -
  H9L41_RS18550 (H9L41_18550) rluD 4420577..4421554 (-) 978 WP_084299920.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H9L41_RS18555 (H9L41_18555) comL 4421553..4422344 (+) 792 WP_028445147.1 outer membrane protein assembly factor BamD Machinery gene
  H9L41_RS18575 (H9L41_18575) - 4423610..4424233 (-) 624 WP_028445146.1 trimeric intracellular cation channel family protein -
  H9L41_RS18580 (H9L41_18580) - 4424237..4425460 (-) 1224 WP_308419533.1 penicillin-binding transpeptidase domain-containing protein -
  H9L41_RS25125 - 4425457..4425831 (-) 375 WP_265583836.1 hypothetical protein -
  H9L41_RS25130 - 4425828..4426658 (-) 831 WP_265583837.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29922.75 Da        Isoelectric Point: 6.7366

>NTDB_id=477861 H9L41_RS18555 WP_028445147.1 4421553..4422344(+) (comL) [Chitinimonas koreensis strain R2A43-10]
MKRILPFLAAALVLSACGTTPKNPGEENPGASAEEMYREAKQELESGNYNRSVKQFEALQARYPYGRYAQQAELEVAYAN
YKDQEPELALAAIDRFLKAHPTHPNADYALYLKGLVNFIEDRSLFASLAKQDMSERDPKAARESFEAFRDLVTRYPQSRY
APDARDRMAYLVTALADGELHVARYYYKRGAYLAAANRAKAVIERYSNTDRVETALVVMIAAYDKLGQPELRDDARRVLA
QNYPQSKLTPDEIFADGAWWKLW

Nucleotide


Download         Length: 792 bp        

>NTDB_id=477861 H9L41_RS18555 WP_028445147.1 4421553..4422344(+) (comL) [Chitinimonas koreensis strain R2A43-10]
ATGAAGCGCATTCTACCTTTCCTCGCCGCCGCCCTCGTGCTGTCGGCCTGCGGCACCACGCCGAAGAACCCCGGCGAGGA
AAACCCGGGCGCCAGCGCCGAAGAGATGTACCGCGAGGCCAAGCAGGAACTGGAGTCCGGCAACTACAACCGCTCGGTCA
AGCAGTTCGAAGCGCTGCAGGCACGCTACCCGTACGGCCGCTACGCCCAGCAGGCCGAGCTCGAAGTGGCCTACGCCAAC
TACAAGGACCAGGAACCCGAACTCGCGCTGGCCGCGATCGACCGCTTCCTCAAGGCCCACCCGACCCATCCGAATGCCGA
CTACGCGCTCTACCTCAAGGGACTGGTCAACTTCATCGAAGATCGCTCGCTGTTCGCCAGCCTGGCCAAGCAGGACATGT
CCGAGCGCGACCCCAAGGCCGCGCGCGAGTCGTTCGAGGCGTTCCGCGACCTGGTCACCCGCTACCCGCAGAGCCGCTAC
GCGCCCGACGCGCGCGACCGCATGGCCTACCTGGTCACTGCGCTGGCCGACGGCGAGCTGCACGTCGCCCGCTACTACTA
CAAGCGCGGCGCCTACCTCGCCGCCGCCAACCGCGCCAAGGCCGTGATCGAGCGCTATTCCAACACCGACCGCGTCGAGA
CCGCGCTGGTGGTGATGATCGCCGCCTACGACAAGCTCGGCCAGCCCGAGCTGCGCGACGATGCGCGCCGGGTGCTGGCG
CAGAACTACCCGCAGAGCAAGCTGACTCCGGACGAGATTTTCGCCGATGGGGCATGGTGGAAGCTCTGGTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

51.111

100

0.525
  comL Neisseria meningitidis MC58

51.504

100

0.521