Detailed information NTG0047786

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: SPN994039_RS02050
• Genome accession: NC_021005
• Coordinates: 376276..378642 (-)
• Length: 788 a.a.
• NCBI ID: WP_000454482.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae SPN994039
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 371276..383642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPN994039_RS02010 (SPN994039_03790)	vraR	371628..372260 (+)	633	WP_000698438.1	response regulator transcription factor	Regulator
SPN994039_RS12880 (SPN994039_03800)	-	372336..373030 (+)	695	Protein_395	DNA alkylation repair protein	-
SPN994039_RS02030	-	373180..373419 (+)	240	WP_000754501.1	hypothetical protein	-
SPN994039_RS02035 (SPN994039_03810)	cbpG	373500..374090 (+)	591	Protein_397	choline-binding protein CbpG	-
SPN994039_RS02040 (SPN994039_03820)	-	374392..374784 (+)	393	WP_000378125.1	tyrosine-type recombinase/integrase	-
SPN994039_RS02045 (SPN994039_03830)	tig	374945..376228 (+)	1284	WP_000116468.1	trigger factor	-
SPN994039_RS02050 (SPN994039_03840)	recD/recD2/recDB	376276..378642 (-)	2367	WP_000454482.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SPN994039_RS02055 (SPN994039_03850)	lepB	378769..379383 (-)	615	WP_001083986.1	signal peptidase I	-
SPN994039_RS02060 (SPN994039_03860)	rnhC	379387..380268 (-)	882	WP_000146855.1	ribonuclease HIII	-
SPN994039_RS02065 (SPN994039_03870)	zapA	380355..380657 (+)	303	WP_000002019.1	cell division protein ZapA	-
SPN994039_RS02070 (SPN994039_03880)	-	380654..381202 (+)	549	WP_000622953.1	CvpA family protein	-
SPN994039_RS02075 (SPN994039_03890)	mutS/mutS2	381306..383642 (+)	2337	WP_001035034.1	endonuclease MutS2	Machinery gene

Sequence

Protein

• Length: 788 a.a.
• Molecular weight: 88696.57 Da
• Isoelectric Point: 4.5836

>NTDB_id=47786 SPN994039_RS02050 WP_000454482.1 376276..378642(-) (recD/recD2/recDB) [Streptococcus pneumoniae SPN994039]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMILAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQTCMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLIRILEKGKQKSQDLETIQKH
ITTVEQELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDFRKKNNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSKESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKRDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDTDLKEIFGK

Nucleotide

• Length: 2367 bp

>NTDB_id=47786 SPN994039_RS02050 WP_000454482.1 376276..378642(-) (recD/recD2/recDB) [Streptococcus pneumoniae SPN994039]
ATGGAAGTTTATTTTTCAGGAACTATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATACCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGATTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAACTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGACCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGCCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGTATCCGCAGTCACTTGATTCGTATCCTTGAAAAAGGAAAACAGAAGAGCCAAGATTTAGAAACTATTCAAAAGCAT
ATCACTACTGTCGAGCAAGAACTGGGGATTGAGTATGATAACATTCAAAAACAAGCTATTTGTGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACTGGTAAGACAACTGTTATCAATGGAATCATCGCTGTTTATGCCCTTTTAG
AAGGACTTGACTTCAGGAAGAAAAACAATCTGCCCATTCTTCTTGCTGCTCCAACTGGTCGAGCTGCTCGTCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACATCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATGCTGACTTTATCATCGTGGATGAATTCTCTATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCAAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGAGAGACAAGGTCATTCATTTGGTTAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACTATGCTACCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATCTACTGGAGAATGTTGAAGAAAAGCAACAAGC
TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACCGCATCCCAGCCA
TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (574-644)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (662-709)

• AAA domain (AAA_30) (332-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	40.885	97.462	0.398