Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NMBB_RS01855 Genome accession   NC_017505
Coordinates   341100..341960 (-) Length   286 a.a.
NCBI ID   WP_002220276.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336100..346960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS01825 (NMBB_0365) - 337168..337560 (+) 393 Protein_325 polyprenyl synthetase family protein -
  NMBB_RS01830 (NMBB_0366) - 337565..338011 (+) 447 WP_002220271.1 DUF441 domain-containing protein -
  NMBB_RS01840 (NMBB_0367) pilF 338503..340179 (+) 1677 WP_002221967.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NMBB_RS01845 (NMBB_0368) - 340264..340473 (-) 210 WP_002212333.1 DNA gyrase inhibitor YacG -
  NMBB_RS01850 (NMBB_0369) coaE 340466..341098 (-) 633 WP_002220275.1 dephospho-CoA kinase -
  NMBB_RS01855 (NMBB_0370) pilD 341100..341960 (-) 861 WP_002220276.1 A24 family peptidase Machinery gene
  NMBB_RS01860 (NMBB_0371) pilG 342034..343266 (-) 1233 WP_002216405.1 type 4 pilus assembly protein PilG Machinery gene
  NMBB_RS01865 (NMBB_0372) pgi 343776..345419 (+) 1644 WP_002235440.1 glucose-6-phosphate isomerase -
  NMBB_RS01870 - 345389..345619 (+) 231 WP_025458979.1 hypothetical protein -
  NMBB_RS01875 (NMBB_0374) dapD 345629..346450 (+) 822 WP_002216408.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31359.40 Da        Isoelectric Point: 8.2213

>NTDB_id=47776 NMBB_RS01855 WP_002220276.1 341100..341960(-) (pilD) [Neisseria meningitidis alpha710]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide


Download         Length: 861 bp        

>NTDB_id=47776 NMBB_RS01855 WP_002220276.1 341100..341960(-) (pilD) [Neisseria meningitidis alpha710]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGCAGTTTCTTAAA
TGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCCTCCTGCCAAACCAAAATCAGCATACGCTATCC
CTTAATCGAACTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(134-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

96.14

99.65

0.958
  pilD Vibrio cholerae strain A1552

44.444

100

0.448
  pilD Vibrio campbellii strain DS40M4

44.928

96.503

0.434
  pilD Acinetobacter baumannii D1279779

46.97

92.308

0.434
  pilD Acinetobacter nosocomialis M2

46.97

92.308

0.434

Multiple sequence alignment