Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMBB_RS01560 Genome accession   NC_017505
Coordinates   281274..281972 (+) Length   232 a.a.
NCBI ID   WP_014575140.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276274..286972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS01540 (NMBB_0300) trpC 277597..278379 (-) 783 WP_002238656.1 indole-3-glycerol phosphate synthase TrpC -
  NMBB_RS01545 (NMBB_0301) - 278430..279386 (-) 957 WP_002224842.1 YheT family hydrolase -
  NMBB_RS15470 - 279383..279514 (-) 132 WP_255304562.1 hypothetical protein -
  NMBB_RS01550 (NMBB_0302) murJ 279518..281056 (-) 1539 WP_014575139.1 murein biosynthesis integral membrane protein MurJ -
  NMBB_RS01555 - 281056..281247 (-) 192 WP_002260368.1 hypothetical protein -
  NMBB_RS01560 (NMBB_0304) dsbA1 281274..281972 (+) 699 WP_014575140.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBB_RS01565 (NMBB_0305) amgK 282029..283033 (-) 1005 WP_014575141.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NMBB_RS01570 (NMBB_0306) - 283103..285511 (+) 2409 WP_014575142.1 LPS-assembly protein LptD -
  NMBB_RS01575 (NMBB_0307A) - 285616..286704 (+) 1089 Protein_282 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25248.84 Da        Isoelectric Point: 5.9457

>NTDB_id=47773 NMBB_RS01560 WP_014575140.1 281274..281972(+) (dsbA1) [Neisseria meningitidis alpha710]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKNVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=47773 NMBB_RS01560 WP_014575140.1 281274..281972(+) (dsbA1) [Neisseria meningitidis alpha710]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAAATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.569

100

0.996
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment