Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMV_RS15280 Genome accession   NC_017501
Coordinates   63251..63715 (+) Length   154 a.a.
NCBI ID   WP_014573686.1    Uniprot ID   A0A9K2PQV1
Organism   Neisseria meningitidis 8013     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 58251..68715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS15280 (NMV_0057) comE 63251..63715 (+) 465 WP_014573686.1 ComEA family DNA-binding protein Machinery gene
  NMV_RS15430 - 63744..63902 (+) 159 WP_002215272.1 hypothetical protein -
  NMV_RS00310 (NMV_0058) dnaJ 63984..65105 (+) 1122 WP_014573687.1 molecular chaperone DnaJ -
  NMV_RS00315 (NMV_0059) - 65301..67319 (+) 2019 WP_002231454.1 OPT family oligopeptide transporter -
  NMV_RS00320 (NMV_0060) rfbC 67363..67920 (-) 558 WP_014573688.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16561.80 Da        Isoelectric Point: 10.8645

>NTDB_id=47764 NMV_RS15280 WP_014573686.1 63251..63715(+) (comE) [Neisseria meningitidis 8013]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47764 NMV_RS15280 WP_014573686.1 63251..63715(+) (comE) [Neisseria meningitidis 8013]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment