Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SPN032672_RS09135 Genome accession   NC_021003
Coordinates   1703858..1704124 (+) Length   88 a.a.
NCBI ID   WP_001818764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN032672     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698858..1709124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN032672_RS09115 - 1698965..1699474 (+) 510 WP_000619941.1 GNAT family N-acetyltransferase -
  SPN032672_RS09120 pheT 1699551..1701956 (+) 2406 WP_000961596.1 phenylalanine--tRNA ligase subunit beta -
  SPN032672_RS09125 - 1702129..1703130 (-) 1002 WP_000597994.1 endonuclease/exonuclease/phosphatase family protein -
  SPN032672_RS09130 - 1703286..1703774 (+) 489 Protein_1706 transposase -
  SPN032672_RS09135 HI0659 1703858..1704124 (+) 267 WP_001818764.1 helix-turn-helix domain-containing protein Machinery gene
  SPN032672_RS09140 metE 1704385..1706634 (+) 2250 WP_000108203.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SPN032672_RS09145 metF 1706698..1707564 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9627.08 Da        Isoelectric Point: 4.2720

>NTDB_id=47751 SPN032672_RS09135 WP_001818764.1 1703858..1704124(+) (HI0659) [Streptococcus pneumoniae SPN032672]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=47751 SPN032672_RS09135 WP_001818764.1 1703858..1704124(+) (HI0659) [Streptococcus pneumoniae SPN032672]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

87.5

0.5

Multiple sequence alignment