Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NMV_RS08425 Genome accession   NC_017501
Coordinates   1638528..1639331 (+) Length   267 a.a.
NCBI ID   WP_002221259.1    Uniprot ID   Q9JVB7
Organism   Neisseria meningitidis 8013     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1633528..1644331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS08405 (NMV_1693) lptE 1634436..1634915 (-) 480 WP_002214127.1 LPS assembly lipoprotein LptE -
  NMV_RS08410 (NMV_1694) pgeF 1634967..1635746 (-) 780 WP_002217672.1 peptidoglycan editing factor PgeF -
  NMV_RS16350 - 1635913..1636086 (+) 174 Protein_1563 IS5/IS1182 family transposase -
  NMV_RS08415 (NMV_1695) - 1636305..1637252 (+) 948 WP_002240403.1 bile acid:sodium symporter family protein -
  NMV_RS08420 (NMV_1696) rluD 1637405..1638529 (-) 1125 WP_014574143.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NMV_RS08425 (NMV_1697) comL 1638528..1639331 (+) 804 WP_002221259.1 outer membrane protein assembly factor BamD Machinery gene
  NMV_RS08430 (NMV_1698) comA 1639389..1641608 (-) 2220 WP_153066617.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NMV_RS16355 - 1641690..1641881 (+) 192 Protein_1568 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30808.83 Da        Isoelectric Point: 8.9351

>NTDB_id=47751 NMV_RS08425 WP_002221259.1 1638528..1639331(+) (comL) [Neisseria meningitidis 8013]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=47751 NMV_RS08425 WP_002221259.1 1638528..1639331(+) (comL) [Neisseria meningitidis 8013]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCGCTGAGTGCCTGTGCCACTCAAGGTACGGTAGATAAAGATGC
CCAGATTACCCAAGACTGGAGTGTGGAAAAACTCTATGCCGAAGCCCAGGATGAGCTGAACAGCAGCAATTATACTCGAG
CTGTCAAATTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGTTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACGCGTTATG
TTGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.502

100

0.985
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment