Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   H7789_RS09335 Genome accession   NZ_CP060646
Coordinates   54216..54311 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1026     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49216..59311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7789_RS00315 (H7789_00320) - 49935..50864 (+) 930 WP_111703086.1 hypothetical protein -
  H7789_RS00320 (H7789_00325) - 50867..51436 (+) 570 WP_032460531.1 hypothetical protein -
  H7789_RS00325 (H7789_00330) - 51440..51802 (+) 363 WP_136019058.1 hypothetical protein -
  H7789_RS00330 (H7789_00335) purB 51799..53091 (+) 1293 WP_038433842.1 adenylosuccinate lyase -
  H7789_RS00335 (H7789_00340) comR 53221..54132 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  H7789_RS09335 comS 54216..54311 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  H7789_RS00340 (H7789_00345) ruvB 54358..55356 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  H7789_RS00345 (H7789_00350) - 55494..55931 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  H7789_RS00350 (H7789_00355) - 55954..56355 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  H7789_RS00355 (H7789_00360) - 56352..58127 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=477389 H7789_RS09335 WP_198462994.1 54216..54311(+) (comS) [Streptococcus pyogenes strain TSPY1026]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=477389 H7789_RS09335 WP_198462994.1 54216..54311(+) (comS) [Streptococcus pyogenes strain TSPY1026]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452