Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMV_RS03475 Genome accession   NC_017501
Coordinates   706362..706826 (+) Length   154 a.a.
NCBI ID   WP_014573750.1    Uniprot ID   A0A9K2KMI8
Organism   Neisseria meningitidis 8013     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701362..711826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS03475 (NMV_0721) comE 706362..706826 (+) 465 WP_014573750.1 ComEA family DNA-binding protein Machinery gene
  NMV_RS03480 (NMV_0722) - 706940..707376 (-) 437 Protein_644 HK97 family phage prohead protease -
  NMV_RS03485 (NMV_0723) - 707488..708081 (-) 594 WP_002216704.1 hypothetical protein -
  NMV_RS03490 (NMV_0724) prmB 708226..709125 (+) 900 WP_002236035.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMV_RS03495 (NMV_0726) - 709406..710143 (+) 738 WP_002229783.1 toxin-antitoxin system YwqK family antitoxin -
  NMV_RS03500 (NMV_0727) - 710269..710541 (+) 273 WP_002212673.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16545.85 Da        Isoelectric Point: 10.9585

>NTDB_id=47736 NMV_RS03475 WP_014573750.1 706362..706826(+) (comE) [Neisseria meningitidis 8013]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47736 NMV_RS03475 WP_014573750.1 706362..706826(+) (comE) [Neisseria meningitidis 8013]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment