Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H7789_RS01415 Genome accession   NZ_CP060646
Coordinates   269117..270187 (+) Length   356 a.a.
NCBI ID   WP_136019010.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1026     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 264117..275187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7789_RS01400 (H7789_01405) amiA 264645..266615 (+) 1971 WP_032464812.1 peptide ABC transporter substrate-binding protein Regulator
  H7789_RS01405 (H7789_01410) amiC 266680..268182 (+) 1503 WP_136261299.1 ABC transporter permease Regulator
  H7789_RS01410 (H7789_01415) amiD 268182..269108 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  H7789_RS01415 (H7789_01420) amiE 269117..270187 (+) 1071 WP_136019010.1 ABC transporter ATP-binding protein Regulator
  H7789_RS01420 (H7789_01425) amiF 270180..271103 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  H7789_RS09340 (H7789_01430) - 271141..271224 (-) 84 Protein_236 IS3 family transposase -
  H7789_RS01425 (H7789_01435) - 271251..271496 (-) 246 WP_032464813.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39733.80 Da        Isoelectric Point: 5.6707

>NTDB_id=477352 H7789_RS01415 WP_136019010.1 269117..270187(+) (amiE) [Streptococcus pyogenes strain TSPY1026]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKTPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=477352 H7789_RS01415 WP_136019010.1 269117..270187(+) (amiE) [Streptococcus pyogenes strain TSPY1026]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAACGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAACACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.667

100

0.775
  amiE Streptococcus thermophilus LMG 18311

75.556

100

0.764
  amiE Streptococcus thermophilus LMD-9

75.556

100

0.764
  oppD Streptococcus mutans UA159

56.677

94.663

0.537