Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H7789_RS01420 Genome accession   NZ_CP060646
Coordinates   270180..271103 (+) Length   307 a.a.
NCBI ID   WP_002986000.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1026     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 265180..276103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7789_RS01405 (H7789_01410) amiC 266680..268182 (+) 1503 WP_136261299.1 ABC transporter permease Regulator
  H7789_RS01410 (H7789_01415) amiD 268182..269108 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  H7789_RS01415 (H7789_01420) amiE 269117..270187 (+) 1071 WP_136019010.1 ABC transporter ATP-binding protein Regulator
  H7789_RS01420 (H7789_01425) amiF 270180..271103 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  H7789_RS09340 (H7789_01430) - 271141..271224 (-) 84 Protein_236 IS3 family transposase -
  H7789_RS01425 (H7789_01435) - 271251..271496 (-) 246 WP_032464813.1 hypothetical protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34715.90 Da        Isoelectric Point: 6.5113

>NTDB_id=477353 H7789_RS01420 WP_002986000.1 270180..271103(+) (amiF) [Streptococcus pyogenes strain TSPY1026]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=477353 H7789_RS01420 WP_002986000.1 270180..271103(+) (amiF) [Streptococcus pyogenes strain TSPY1026]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAGTCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTCTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGCCAAAAAGAACT
TGTTGTCTATCATCCAGACCAGCATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.353

99.674

0.821
  amiF Streptococcus thermophilus LMD-9

82.026

99.674

0.818
  amiF Streptococcus salivarius strain HSISS4

82.026

99.674

0.818