Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J1G54_RS07620 Genome accession   NZ_CP071491
Coordinates   1511815..1513653 (+) Length   612 a.a.
NCBI ID   WP_021112525.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1506815..1518653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS07595 (J1G54_07595) - 1507352..1507967 (-) 616 Protein_1483 IS1595 family transposase -
  J1G54_RS07600 (J1G54_07600) sodA 1508414..1509034 (-) 621 WP_062924358.1 superoxide dismutase [Mn] -
  J1G54_RS07605 (J1G54_07605) modC 1509253..1510314 (-) 1062 WP_075630415.1 molybdenum ABC transporter ATP-binding protein ModC -
  J1G54_RS07610 (J1G54_07610) modB 1510314..1511015 (-) 702 WP_075604613.1 molybdate ABC transporter permease subunit -
  J1G54_RS07615 (J1G54_07615) pgsA 1511171..1511719 (+) 549 WP_021112533.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J1G54_RS07620 (J1G54_07620) uvrC 1511815..1513653 (+) 1839 WP_021112525.1 excinuclease ABC subunit UvrC Machinery gene
  J1G54_RS07625 (J1G54_07625) htpX 1513691..1514542 (-) 852 WP_010787063.1 protease HtpX -
  J1G54_RS07630 (J1G54_07630) dinB 1514649..1515719 (-) 1071 WP_010787064.1 DNA polymerase IV -
  J1G54_RS07635 (J1G54_07635) - 1515863..1516771 (+) 909 WP_021109738.1 lysine exporter LysO family protein -
  J1G54_RS07640 (J1G54_07640) ampD 1516764..1517330 (-) 567 WP_021109739.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J1G54_RS07645 (J1G54_07645) - 1517388..1518227 (+) 840 WP_021109740.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69526.60 Da        Isoelectric Point: 8.7716

>NTDB_id=477338 J1G54_RS07620 WP_021112525.1 1511815..1513653(+) (uvrC) [Glaesserella parasuis strain GHP1807]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDNYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLISKMETAAEDLDFEAAARFRDQIQQVRAVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HPVSEVEALEKVLSEQTGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALETFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATFDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=477338 J1G54_RS07620 WP_021112525.1 1511815..1513653(+) (uvrC) [Glaesserella parasuis strain GHP1807]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGACTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCACTCTTGCCAGCCGAA
AAACTGAAGCCTTGGTATCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTTCGTGATGATAAATCTTACCCTTATATTTTGCTCAC
CAAACACCAGCACCCACGTTTAGCCAGCTTTCGGGGAAGTAAAAAAATCGCAGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGGGAAACCTTAAATCTGCTACAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAACTACTACAAAAAC
CGTTCTCGCCCTTGTTTACAATATCAAATCGGGCGTTGCCTTGCCCCTTGCGTGGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATTAGCAAAATGG
AAACAGCAGCGGAAGATCTGGATTTTGAAGCTGCCGCGCGTTTTCGAGATCAAATTCAGCAGGTGCGAGCGGTCACTGAA
AAGCAATTTGTATCGAACGAACGCTTGGACGATCTCGATATTATTTCGATTGCCTATCAACACGGTATTGCTTGCGTGCA
TATTCTGTTTGTACGACAAGGGAAAGTGTTGGGTAGCCGAAGTTATTTCCCCAAAGTGCCGAACCATACGGAACTTGCTG
AATTGAGCGACACTTTTATCGGGCAGTTTTATTTGCAGATGAACCAACATCGCACCATTCCGCACCAAATCATTATCGAT
CACCCCGTGAGCGAAGTGGAAGCCTTAGAAAAGGTATTGTCGGAACAAACAGGACATAAAGTGAGTATTACCGATAAGGT
GCGAGGCGAAAAAAGCCGTTATCTTGCTCTTGCTAAAACCAACGCAATGGCAGCACTGACTTTGCAACTCAAGCAAGATG
CTCGTATCCAAACCCGTTATGAAGCCTTACAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGTTTCGACATC
AGTCATACGATGGGCGAACAAACAGTCGCTTCTTGTGTGGTATTTGATGAAAATGGACCGTTAAAATCCGATTATCGCCG
TTTCAATATTGAAGGCATTACGGGGGGCGATGATTATGCTGCAATGGAACAAGCCCTGCTCAAACGTTACGATAAACCGC
TTCCGCCTGAAAAAATCCCCGATATTATCTTTATTGACGGCGGAAAAGGGCAGTTAAACCGAGCCTTAGAAACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTTATCGGCGTAGCAAAAGGCGTAGAACGCAAGGCAGGGTTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACTTACCGCCCGACAGCCCAGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGCGGTTTAGAGGCA
ATCGCTGGCGTTGGAGCCAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACATT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGACACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(204-236)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.459

99.02

0.371
  uvrC Streptococcus pneumoniae R6

37.129

99.02

0.368
  uvrC Streptococcus pneumoniae D39

37.129

99.02

0.368