Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   J1G54_RS02950 Genome accession   NZ_CP071491
Coordinates   523086..523667 (-) Length   193 a.a.
NCBI ID   WP_005710402.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1807     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518086..528667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G54_RS02910 (J1G54_02910) - 518711..518971 (-) 261 WP_005714586.1 hypothetical protein -
  J1G54_RS02915 (J1G54_02915) - 519174..519689 (+) 516 WP_203398995.1 TIGR00645 family protein -
  J1G54_RS02920 (J1G54_02920) - 519776..521074 (-) 1299 WP_021118667.1 NAD(P)/FAD-dependent oxidoreductase -
  J1G54_RS02940 (J1G54_02940) greB 521602..522090 (-) 489 WP_005710400.1 transcription elongation factor GreB -
  J1G54_RS02945 (J1G54_02945) - 522090..523025 (-) 936 WP_021110391.1 KpsF/GutQ family sugar-phosphate isomerase -
  J1G54_RS02950 (J1G54_02950) pilF 523086..523667 (-) 582 WP_005710402.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  J1G54_RS02955 (J1G54_02955) - 523767..524927 (-) 1161 WP_010786053.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  J1G54_RS02960 (J1G54_02960) - 525128..525436 (-) 309 WP_005710405.1 helix-turn-helix domain-containing protein -
  J1G54_RS02965 (J1G54_02965) - 525440..525778 (-) 339 WP_160436559.1 toxin -
  J1G54_RS02990 (J1G54_02990) gltX 526618..528057 (+) 1440 WP_160414413.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22324.27 Da        Isoelectric Point: 8.0872

>NTDB_id=477314 J1G54_RS02950 WP_005710402.1 523086..523667(-) (pilF) [Glaesserella parasuis strain GHP1807]
MTFAKFFRNLTACSVALWLVACANQTTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKLFDKAYQQFETALTSQEAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=477314 J1G54_RS02950 WP_005710402.1 523086..523667(-) (pilF) [Glaesserella parasuis strain GHP1807]
ATGACCTTTGCAAAATTTTTCCGTAATTTGACCGCTTGTAGCGTGGCATTATGGCTTGTTGCTTGTGCGAACCAAACTAC
TCAGGTGGATTTTAACCGCTCGGAAGCCGTCAAAGCTCGCATTAATTTGGCCCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAGAACATTGACAAAGCGCTTGAACACGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTAAATAACTACGGTACCTTTCTGTGCAAACAAAAGCTGTTCGACAAAGCTTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGAAGCCTATTACAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_2)

(74-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

100

100

1
  pilF/pilF2 Haemophilus influenzae Rd KW20

44.693

92.746

0.415