Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMV_RS01690 Genome accession   NC_017501
Coordinates   320494..320958 (+) Length   154 a.a.
NCBI ID   WP_014573750.1    Uniprot ID   A0A9K2KMI8
Organism   Neisseria meningitidis 8013     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 321371..323577 320494..320958 flank 413


Gene organization within MGE regions


Location: 320494..323577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS01690 (NMV_0333) comE 320494..320958 (+) 465 WP_014573750.1 ComEA family DNA-binding protein Machinery gene
  NMV_RS15095 - 321018..321218 (+) 201 WP_079758530.1 hypothetical protein -
  NMV_RS01700 (NMV_0335) - 321371..322378 (+) 1008 WP_014573751.1 IS5 family transposase -
  NMV_RS01710 (NMV_0336) - 322924..323577 (+) 654 WP_002255406.1 IS1595-like element IS1016C family transposase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16545.85 Da        Isoelectric Point: 10.9585

>NTDB_id=47728 NMV_RS01690 WP_014573750.1 320494..320958(+) (comE) [Neisseria meningitidis 8013]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47728 NMV_RS01690 WP_014573750.1 320494..320958(+) (comE) [Neisseria meningitidis 8013]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment