Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   SPN032672_RS06405 Genome accession   NC_021003
Coordinates   1188153..1188389 (+) Length   78 a.a.
NCBI ID   WP_000939548.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN032672     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183153..1193389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN032672_RS12000 - 1186209..1187055 (+) 847 Protein_1170 IS630 family transposase -
  SPN032672_RS12005 - 1187090..1187887 (-) 798 Protein_1171 transposase -
  SPN032672_RS06405 comW 1188153..1188389 (+) 237 WP_000939548.1 sigma(X)-activator ComW Regulator
  SPN032672_RS06410 - 1188620..1189906 (+) 1287 WP_001818679.1 adenylosuccinate synthase -
  SPN032672_RS06415 tadA 1190107..1190574 (+) 468 WP_000291870.1 tRNA adenosine(34) deaminase TadA -
  SPN032672_RS06420 - 1190761..1191204 (+) 444 WP_000701992.1 dUTP diphosphatase -
  SPN032672_RS06425 - 1191206..1191721 (+) 516 WP_000691235.1 histidine phosphatase family protein -
  SPN032672_RS06430 radA 1191735..1193096 (+) 1362 WP_078157384.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9716.17 Da        Isoelectric Point: 6.7051

>NTDB_id=47727 SPN032672_RS06405 WP_000939548.1 1188153..1188389(+) (comW) [Streptococcus pneumoniae SPN032672]
MLQKIYEQMTNFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=47727 SPN032672_RS06405 WP_000939548.1 1188153..1188389(+) (comW) [Streptococcus pneumoniae SPN032672]
ATGTTACAAAAAATTTATGAGCAGATGACTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

97.436

100

0.974
  comW Streptococcus pneumoniae D39

97.436

100

0.974
  comW Streptococcus pneumoniae R6

97.436

100

0.974
  comW Streptococcus pneumoniae TIGR4

97.436

100

0.974
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756

Multiple sequence alignment