Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J1G47_RS07445 Genome accession   NZ_CP071487
Coordinates   1478125..1479963 (-) Length   612 a.a.
NCBI ID   WP_075592733.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1473125..1484963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS07420 (J1G47_07420) - 1473579..1474418 (-) 840 WP_010787067.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  J1G47_RS07425 (J1G47_07425) ampD 1474476..1475042 (+) 567 WP_010787066.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J1G47_RS07430 (J1G47_07430) - 1475035..1475943 (-) 909 WP_010787065.1 lysine exporter LysO family protein -
  J1G47_RS07435 (J1G47_07435) dinB 1476087..1477157 (+) 1071 WP_005714148.1 DNA polymerase IV -
  J1G47_RS07440 (J1G47_07440) htpX 1477263..1478114 (+) 852 WP_005714149.1 protease HtpX -
  J1G47_RS07445 (J1G47_07445) uvrC 1478125..1479963 (-) 1839 WP_075592733.1 excinuclease ABC subunit UvrC Machinery gene
  J1G47_RS07450 (J1G47_07450) pgsA 1479996..1480544 (-) 549 WP_005714153.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J1G47_RS07455 (J1G47_07455) modB 1480699..1481400 (+) 702 WP_035491186.1 molybdate ABC transporter permease subunit -
  J1G47_RS07460 (J1G47_07460) modC 1481400..1482461 (+) 1062 WP_005714155.1 molybdenum ABC transporter ATP-binding protein ModC -
  J1G47_RS07465 (J1G47_07465) sodA 1482679..1483299 (+) 621 WP_005714158.1 superoxide dismutase [Mn] -
  J1G47_RS12215 - 1483348..1483652 (-) 305 Protein_1454 hypothetical protein -
  J1G47_RS07470 (J1G47_07470) - 1483683..1484302 (+) 620 Protein_1455 IS1595 family transposase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69499.65 Da        Isoelectric Point: 8.8964

>NTDB_id=477166 J1G47_RS07445 WP_075592733.1 1478125..1479963(-) (uvrC) [Glaesserella parasuis strain YHP1818]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDSYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQMRVVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKMLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HSVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALDTFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=477166 J1G47_RS07445 WP_075592733.1 1478125..1479963(-) (uvrC) [Glaesserella parasuis strain YHP1818]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCAATCTTGCCAGCCGAA
AAACCGAAGCGTTGGTCTCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTCCGTGACGATAAATCTTACCCTTATATTTTGCTCAC
CAAACACCAACACCCACGTTTAGCCAGTTTTCGGGGGAGCAAAAAAATTGCTGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGAGAAACCTTAAATCTGCTCCAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAGCTACTACAAAAAC
CGTTCTCGTCCTTGTTTGCAGTATCAAATCGGGCGTTGCCTTGCCCCTTGCGTTGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATCGGTAAAATGG
AAAAAGCTGCGGAAGATCTGGATTTTGAAGCTGCTGCCCGTTTTCGAGATCAAATTCAGCAGATGCGAGTGGTCACTGAA
AAGCAATTTGTATCGAATGAACGTCTAGACGATCTCGATATTATTTCGATTGCCTACCAACACGGTATCGCTTGCGTACA
TATTCTGTTTGTACGACAAGGGAAAATGTTGGGTAGCCGAAGTTATTTCCCAAAAGTGCCGAACCATACCGAACTTGCCG
AATTGAGTGACACTTTTATCGGGCAATTCTATTTGCAGATGAACCAACATCGCACCATTCCGCATCAAATTATTATCGAT
CACTCCGTGAGCGAAGTGGACGCCTTAGAAAAGGTATTATCGGAACAAGCAGGGCATAAAGTGAGCATTACCGATAAAGT
GCGTGGTGAAAAAAGCCGTTATCTTGCGCTTGCCAAAACGAACGCAATGGCAGCATTGACCTTACAGCTCAAGCAAGATG
CTCGAATCCAAACCCGTTATGAAGCTTTACAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGTTTCGACATC
AGTCATACGATGGGCGAACAAACGGTCGCTTCTTGTGTGGTGTTTGATGAAAATGGACCGTTAAAATCCGACTATCGCCG
TTTCAACATTGAAGGTATTACAGGGGGCGATGATTATGCCGCAATGGAACAAGCCCTGCTCAAACGTTATGATAAACCGC
TACCGCCTGAAAAAATCCCTGATATTATTTTTATTGACGGCGGAAAAGGGCAGTTAAATCGAGCCTTAGACACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTCATCGGTGTGGCAAAAGGCGTAGAACGAAAAGCTGGGCTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACCTACCACCCGACAGCCCTGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGTGGTTTAGAGGCA
ATCGCTGGCGTTGGGGCTAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACACT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGATACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrB/uvrC motif (UVR)

(204-235)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.869

99.673

0.377
  uvrC Streptococcus pneumoniae R6

37.541

99.673

0.374
  uvrC Streptococcus pneumoniae D39

37.541

99.673

0.374