Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLH_RS11905 Genome accession   NC_017492
Coordinates   2293232..2293723 (-) Length   163 a.a.
NCBI ID   WP_014573356.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris A76     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2288232..2298723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH_RS11905 (llh_12450) comX 2293232..2293723 (-) 492 WP_014573356.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLH_RS11910 (llh_12455) ezrA 2293987..2295717 (-) 1731 WP_014573357.1 septation ring formation regulator EzrA -
  LLH_RS11915 (llh_12460) tsf 2295922..2296950 (-) 1029 WP_011677206.1 translation elongation factor Ts -
  LLH_RS11920 (llh_12465) rpsB 2297072..2297838 (-) 767 Protein_2302 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19691.47 Da        Isoelectric Point: 5.7953

>NTDB_id=47716 LLH_RS11905 WP_014573356.1 2293232..2293723(-) (comX) [Lactococcus cremoris subsp. cremoris A76]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQRLIDELRHSYA
KKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMECYWLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=47716 LLH_RS11905 WP_014573356.1 2293232..2293723(-) (comX) [Lactococcus cremoris subsp. cremoris A76]
ATGACATATTACTTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACGTTTGATTGATGAACTACGCCATAGCTACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTAGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAACCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAATGCTATTGGCTACGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.16

100

0.982
  comX Lactococcus lactis subsp. lactis strain DGCC12653

74.847

100

0.748

Multiple sequence alignment