Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DDR89_RS01015 Genome accession   NZ_CP071460
Coordinates   201292..202797 (+) Length   501 a.a.
NCBI ID   WP_002851902.1    Uniprot ID   Q0PBU9
Organism   Campylobacter jejuni strain CAMSA2002     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 196292..207797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDR89_RS00990 (DDR89_00990) fliI 196714..198099 (-) 1386 WP_002851735.1 flagellar protein export ATPase FliI -
  DDR89_RS00995 (DDR89_00995) folE 198099..198671 (-) 573 WP_002851990.1 GTP cyclohydrolase I FolE -
  DDR89_RS01000 (DDR89_01000) tig 198814..200148 (+) 1335 WP_002851938.1 trigger factor -
  DDR89_RS01005 (DDR89_01005) clpP 200148..200732 (+) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  DDR89_RS01010 (DDR89_01010) def 200768..201295 (+) 528 WP_002851936.1 peptide deformylase -
  DDR89_RS01015 (DDR89_01015) comM 201292..202797 (+) 1506 WP_002851902.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DDR89_RS01020 (DDR89_01020) - 202799..203497 (+) 699 WP_002826913.1 NYN domain-containing protein -
  DDR89_RS01025 (DDR89_01025) - 203481..204851 (+) 1371 WP_002851837.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  DDR89_RS01030 (DDR89_01030) purN 204842..205408 (+) 567 WP_002864335.1 phosphoribosylglycinamide formyltransferase -
  DDR89_RS01035 (DDR89_01035) - 205480..206199 (+) 720 WP_002893866.1 TerC family protein -
  DDR89_RS01040 (DDR89_01040) - 206192..206401 (+) 210 WP_002893868.1 alkylphosphonate utilization protein -
  DDR89_RS01045 (DDR89_01045) - 206411..207595 (+) 1185 WP_002851935.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56422.44 Da        Isoelectric Point: 8.7417

>NTDB_id=477096 DDR89_RS01015 WP_002851902.1 201292..202797(+) (comM) [Campylobacter jejuni strain CAMSA2002]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=477096 DDR89_RS01015 WP_002851902.1 201292..202797(+) (comM) [Campylobacter jejuni strain CAMSA2002]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGACATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PBU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473