Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   H7796_RS08560 Genome accession   NZ_CP060640
Coordinates   48257..48352 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY764     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 43257..53352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7796_RS00250 (H7796_00255) - 44124..45821 (+) 1698 WP_020904816.1 AIPR family protein -
  H7796_RS00255 (H7796_00260) purB 45839..47131 (+) 1293 WP_228631392.1 adenylosuccinate lyase -
  H7796_RS00260 (H7796_00265) comR 47262..48173 (+) 912 WP_136069620.1 transcriptional regulator Rgg4/ComR Regulator
  H7796_RS08560 comS 48257..48352 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  H7796_RS00265 (H7796_00270) ruvB 48399..49397 (+) 999 WP_063629365.1 Holliday junction branch migration DNA helicase RuvB -
  H7796_RS00270 (H7796_00275) - 49535..49972 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  H7796_RS00275 (H7796_00280) - 49995..50396 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  H7796_RS00280 (H7796_00285) - 50393..52168 (+) 1776 WP_136118814.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=477066 H7796_RS08560 WP_198462994.1 48257..48352(+) (comS) [Streptococcus pyogenes strain TSPY764]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=477066 H7796_RS08560 WP_198462994.1 48257..48352(+) (comS) [Streptococcus pyogenes strain TSPY764]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452