Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   DDV75_RS03125 Genome accession   NZ_CP071459
Coordinates   594960..595343 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CAMSA2038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589960..600343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV75_RS03105 (DDV75_03105) - 590039..591973 (-) 1935 WP_207286931.1 ribonuclease R family protein -
  DDV75_RS03110 (DDV75_03110) ilvC 592092..593114 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  DDV75_RS03115 (DDV75_03115) - 593118..594200 (+) 1083 WP_052789501.1 divergent polysaccharide deacetylase family protein -
  DDV75_RS03120 (DDV75_03120) dprA 594190..594963 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  DDV75_RS03125 (DDV75_03125) dprB 594960..595343 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  DDV75_RS03130 (DDV75_03130) - 595372..596211 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DDV75_RS03135 (DDV75_03135) msrA 596387..596884 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  DDV75_RS03140 (DDV75_03140) ppa 596925..597443 (-) 519 WP_002858521.1 inorganic diphosphatase -
  DDV75_RS03145 (DDV75_03145) adk 597453..598031 (-) 579 WP_002858481.1 adenylate kinase -
  DDV75_RS03150 (DDV75_03150) aspS 598028..599779 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=477056 DDV75_RS03125 WP_002858579.1 594960..595343(+) (dprB) [Campylobacter jejuni strain CAMSA2038]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=477056 DDV75_RS03125 WP_002858579.1 594960..595343(+) (dprB) [Campylobacter jejuni strain CAMSA2038]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449