Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   H7797_RS09945 Genome accession   NZ_CP060639
Coordinates   54249..54344 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY153     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49249..59344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7797_RS00315 (H7797_00320) - 50116..51813 (+) 1698 WP_111692961.1 AIPR family protein -
  H7797_RS00320 (H7797_00325) purB 51831..53123 (+) 1293 WP_020904817.1 adenylosuccinate lyase -
  H7797_RS00325 (H7797_00330) comR 53254..54165 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  H7797_RS09945 comS 54249..54344 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  H7797_RS00330 (H7797_00335) ruvB 54391..55389 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  H7797_RS00335 (H7797_00340) - 55527..55964 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  H7797_RS00340 (H7797_00345) - 55987..56388 (+) 402 WP_111692962.1 MORN repeat-containing protein -
  H7797_RS00345 (H7797_00350) - 56385..58160 (+) 1776 WP_111692963.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=477014 H7797_RS09945 WP_198462994.1 54249..54344(+) (comS) [Streptococcus pyogenes strain TSPY153]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=477014 H7797_RS09945 WP_198462994.1 54249..54344(+) (comS) [Streptococcus pyogenes strain TSPY153]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452