Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J1F19_RS07210 Genome accession   NZ_CP071439
Coordinates   1532419..1533156 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EcPNK004     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527419..1538156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS07195 (J1F19_07195) clpC 1527873..1530446 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  J1F19_RS07200 (J1F19_07200) yfiH 1530576..1531307 (-) 732 WP_000040155.1 purine nucleoside phosphorylase YfiH -
  J1F19_RS07205 (J1F19_07205) rluD 1531304..1532284 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J1F19_RS07210 (J1F19_07210) comL 1532419..1533156 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J1F19_RS07215 (J1F19_07215) raiA 1533426..1533767 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J1F19_RS07220 (J1F19_07220) pheL 1533871..1533918 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J1F19_RS07225 (J1F19_07225) pheA 1534018..1535178 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  J1F19_RS07230 (J1F19_07230) tyrA 1535221..1536342 (-) 1122 WP_000225203.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J1F19_RS07235 (J1F19_07235) aroF 1536353..1537423 (-) 1071 WP_001168050.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J1F19_RS07240 (J1F19_07240) yfiL 1537632..1537997 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=476904 J1F19_RS07210 WP_000197686.1 1532419..1533156(+) (comL) [Escherichia coli strain EcPNK004]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=476904 J1F19_RS07210 WP_000197686.1 1532419..1533156(+) (comL) [Escherichia coli strain EcPNK004]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAAATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376