Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J1137_RS05495 Genome accession   NZ_CP071436
Coordinates   1124036..1124773 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EcPNK006     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1119036..1129773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1137_RS05465 (J1137_05465) yfiL 1119195..1119560 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  J1137_RS05470 (J1137_05470) aroF 1119770..1120840 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J1137_RS05475 (J1137_05475) tyrA 1120851..1121972 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J1137_RS05480 (J1137_05480) pheA 1122015..1123175 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  J1137_RS05485 (J1137_05485) pheL 1123273..1123320 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J1137_RS05490 (J1137_05490) raiA 1123424..1123765 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J1137_RS05495 (J1137_05495) comL 1124036..1124773 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J1137_RS05500 (J1137_05500) rluD 1124908..1125888 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J1137_RS05505 (J1137_05505) yfiH 1125885..1126616 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  J1137_RS05510 (J1137_05510) clpC 1126746..1129319 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=476831 J1137_RS05495 WP_000197686.1 1124036..1124773(-) (comL) [Escherichia coli strain EcPNK006]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=476831 J1137_RS05495 WP_000197686.1 1124036..1124773(-) (comL) [Escherichia coli strain EcPNK006]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376