Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H9H53_RS03190 Genome accession   NZ_CP060595
Coordinates   693669..694535 (-) Length   288 a.a.
NCBI ID   WP_235200353.1    Uniprot ID   -
Organism   Pseudomonas monteilii strain A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 688669..699535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9H53_RS03155 - 689199..690494 (-) 1296 WP_016713389.1 NAD(P)/FAD-dependent oxidoreductase -
  H9H53_RS03160 - 690579..690752 (-) 174 WP_084297448.1 DUF3094 family protein -
  H9H53_RS03165 - 690885..691514 (-) 630 WP_013970766.1 DUF1780 domain-containing protein -
  H9H53_RS03170 - 691570..692001 (-) 432 WP_028699901.1 hypothetical protein -
  H9H53_RS03175 - 692088..692795 (+) 708 WP_019097626.1 energy-coupling factor ABC transporter permease -
  H9H53_RS03180 yacG 692849..693049 (-) 201 WP_016484797.1 DNA gyrase inhibitor YacG -
  H9H53_RS03185 coaE 693046..693669 (-) 624 WP_016713386.1 dephospho-CoA kinase -
  H9H53_RS03190 pilD 693669..694535 (-) 867 WP_235200353.1 prepilin peptidase Machinery gene
  H9H53_RS03195 - 694538..695746 (-) 1209 WP_235200354.1 type II secretion system F family protein -
  H9H53_RS03200 - 695963..696373 (+) 411 WP_019097784.1 pilin -
  H9H53_RS03210 - 696688..697628 (+) 941 Protein_613 IS3 family transposase -
  H9H53_RS03215 - 697692..698842 (+) 1151 WP_235200355.1 IS3 family transposase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31905.19 Da        Isoelectric Point: 7.5995

>NTDB_id=476814 H9H53_RS03190 WP_235200353.1 693669..694535(-) (pilD) [Pseudomonas monteilii strain A2]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVFRLPIMLERQWQREAQEVLGLPVTQHERFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGRCSACKTRISPRYPMVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDAEHQLLPDVLVL
PMLWLGLIVNAFNLYAPLTDALLGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide


Download         Length: 867 bp        

>NTDB_id=476814 H9H53_RS03190 WP_235200353.1 693669..694535(-) (pilD) [Pseudomonas monteilii strain A2]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTGAATGTGCTGGTGTTTCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGT
TGCCGGTTACGCAGCACGAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTTATCAGTTACCTGGCATTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGATGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGTTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCCTTCAACCTGTACGCCCCGCTAACCGACGCGCTGTTGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACGTTGTTGCTGTCATCGGTGGTGGGGGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCAGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.069

96.181

0.51
  pilD Acinetobacter baumannii D1279779

50.534

97.569

0.493
  pilD Acinetobacter nosocomialis M2

49.822

97.569

0.486
  pilD Vibrio campbellii strain DS40M4

49.104

96.875

0.476
  pilD Neisseria gonorrhoeae MS11

48.507

93.056

0.451