Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J0O73_RS18340 Genome accession   NZ_CP071375
Coordinates   3801284..3802021 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain E105     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3796284..3807021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0O73_RS18325 (J0O73_18305) clpC 3796738..3799311 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  J0O73_RS18330 (J0O73_18310) yfiH 3799441..3800172 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  J0O73_RS18335 (J0O73_18315) rluD 3800169..3801149 (-) 981 WP_000079120.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J0O73_RS18340 (J0O73_18320) comL 3801284..3802021 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J0O73_RS18345 (J0O73_18325) - 3802072..3803400 (-) 1329 WP_053884740.1 IS4-like element IS4 family transposase -
  J0O73_RS18350 (J0O73_18330) raiA 3803732..3804073 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J0O73_RS18355 (J0O73_18335) pheL 3804177..3804224 (+) 48 WP_010723158.1 phe operon leader peptide -
  J0O73_RS18360 (J0O73_18340) pheA 3804323..3805483 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  J0O73_RS18365 (J0O73_18345) tyrA 3805526..3806647 (-) 1122 WP_001603242.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=476783 J0O73_RS18340 WP_000197686.1 3801284..3802021(+) (comL) [Escherichia coli strain E105]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=476783 J0O73_RS18340 WP_000197686.1 3801284..3802021(+) (comL) [Escherichia coli strain E105]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376