Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   JZY07_RS06525 Genome accession   NZ_CP071305
Coordinates   1293829..1295613 (-) Length   594 a.a.
NCBI ID   WP_024412288.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288829..1300613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS06505 (JZY07_06505) - 1291522..1291686 (-) 165 WP_024393955.1 hypothetical protein -
  JZY07_RS06510 (JZY07_06510) - 1291742..1291903 (-) 162 WP_153309170.1 hypothetical protein -
  JZY07_RS06515 (JZY07_06515) obgE 1292127..1293440 (-) 1314 WP_032501827.1 GTPase ObgE -
  JZY07_RS06520 (JZY07_06520) - 1293644..1293772 (-) 129 WP_024412289.1 DUF4044 domain-containing protein -
  JZY07_RS06525 (JZY07_06525) uvrC 1293829..1295613 (-) 1785 WP_024412288.1 excinuclease ABC subunit UvrC Machinery gene
  JZY07_RS06530 (JZY07_06530) - 1295853..1296596 (+) 744 WP_002935470.1 ABC transporter ATP-binding protein -
  JZY07_RS06535 (JZY07_06535) - 1296593..1298203 (+) 1611 WP_024412287.1 hypothetical protein -
  JZY07_RS06540 (JZY07_06540) - 1298231..1298674 (-) 444 WP_002935466.1 VOC family protein -
  JZY07_RS06545 (JZY07_06545) ldcB 1298763..1299512 (-) 750 WP_032501826.1 LD-carboxypeptidase LdcB/DacB -
  JZY07_RS06550 (JZY07_06550) - 1299873..1300124 (-) 252 WP_024412285.1 phage holin -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68183.36 Da        Isoelectric Point: 9.0579

>NTDB_id=476701 JZY07_RS06525 WP_024412288.1 1293829..1295613(-) (uvrC) [Streptococcus suis strain SC183]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLMITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVLKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FKNGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAELVKESLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=476701 JZY07_RS06525 WP_024412288.1 1293829..1295613(-) (uvrC) [Streptococcus suis strain SC183]
ATGAACGATTTGATAAAGCATAAGTTGGAGTTGCTGCCGGACAGTCCGGGTTGCTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTGCGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCCTAGTATCTGAAATTGCCGACTTTGAATTCATCGTAACGGATTCTAATATCGAGGCGCTCTTGTTGGAAATCAAT
CTGATTCAGGAAAACAAGCCTCGCTATAACATCATGCTCAAGGATGACAAGTCTTATCCTTTTATCAAAATTACTAAAGA
ACGTCACCCACGGCTGATGATTACACGGCAGATTAAGAAGGACGGTGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGCAAATTGCCTGAGAACAAGTACTGTCTT
TATTATCATTTGGGGCAATGTTTGGCACACGGGGAAAACCTGCCCAGCCTGTCTGACTATGACAAGATGGCTAAGGAAGT
GGCCCAGTTCTTGACAGGTCATGATGATAAGATTGTCAAGGAAGTGCAGGACAAGATGAAGGCGGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATATCGTGATGTCCTGCAATCCATTTCCACCCTACGGACCAAGCAACGAGTGATGGCTCAT
GACTTGCAAAACCGCGATGTCTTTGGTTATTATGTAGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATACTATAATGATGCGGACGAAGATTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCGTCGGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTGCTTAAGCCCCAGCGTGGCGAGAAGAAGCAGCTCATCAATCTGGCGACCAAGAATGCGCGTGTTAG
TCTGGAGCAGAAGTTTAATCTCTTGGAGAAAAATCTGGAGAAGACCTACGGTGCGGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTCGACAACTCCAACATCATGGGGACCAGTCCTGTGTCGGCTATGGTGGTC
TTTAAAAATGGGGTGCCTAATAAAAAGGAATACCGCAAGTACAAGATTAAGACGGTGGAGGGACCGGATGACTATGCTTC
CATGCGAGAAGTGTTGCAACGGCGGTATAGTCGGGTGCTTCGTGACGGTTTGACACCGCCTGATTTGATTATCATTGACG
GTGGTCAGGGGCAGGTCAATGTTGCCAAGCAGGTCATCGAGCAGGAGTTGGGGATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACCCACGAGTTGCTTTTTGGTAATCCGCTGGAAGTGGTGGAATTGCCTCGTAATTCTCAGGA
ATTTTTCCTCCTGCATCGGATTCAGGATGAGGTTCACCGCTTTGCTATCGAGTTTCACCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCCAAATTGGACGGCATAGAGGGCTTGGGACCAAAACGCAAACAGGCTTTGATGAAGCATTTCAAGTCTATT
GGCAATATCCAGTCGGCCAGCCTGCAAGAAATCGCAGAAGCTGGCGTGCCGTATAAGGTGGCGGAGTTGGTCAAGGAAAG
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(196-229)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.234

99.832

0.771
  uvrC Streptococcus pneumoniae R6

76.897

99.832

0.768
  uvrC Streptococcus pneumoniae D39

76.897

99.832

0.768