Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   JZY07_RS05505 Genome accession   NZ_CP071305
Coordinates   1092299..1093369 (-) Length   356 a.a.
NCBI ID   WP_024412106.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1087299..1098369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS05480 (JZY07_05480) - 1088512..1088751 (+) 240 WP_015646833.1 DUF6290 family protein -
  JZY07_RS05485 (JZY07_05485) - 1088741..1089007 (+) 267 WP_024412110.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JZY07_RS05490 (JZY07_05490) braR 1089046..1089714 (+) 669 WP_024412109.1 response regulator transcription factor Regulator
  JZY07_RS05495 (JZY07_05495) - 1089711..1090652 (+) 942 WP_024412108.1 sensor histidine kinase -
  JZY07_RS05500 (JZY07_05500) - 1090728..1092236 (+) 1509 WP_024412107.1 phosphoglucomutase -
  JZY07_RS05505 (JZY07_05505) xerS 1092299..1093369 (-) 1071 WP_024412106.1 tyrosine recombinase XerS Machinery gene
  JZY07_RS05510 (JZY07_05510) - 1093728..1095977 (-) 2250 WP_024412105.1 zinc-ribbon domain-containing protein -
  JZY07_RS05515 (JZY07_05515) - 1095981..1096715 (-) 735 WP_024412104.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41545.71 Da        Isoelectric Point: 9.2257

>NTDB_id=476695 JZY07_RS05505 WP_024412106.1 1092299..1093369(-) (xerS) [Streptococcus suis strain SC183]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVTVERIADIPLDILEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=476695 JZY07_RS05505 WP_024412106.1 1092299..1093369(-) (xerS) [Streptococcus suis strain SC183]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAATC
AAAATTGGCTGTGCCTTACAGTTTTACAACCTTGTATGAATACTTGAAAGAATACCGTCGTTTTTTTGAGTGGTTGCAGG
ATTCAGATTTGGTCACTGTTGAACGGATTGCTGACATTCCGCTGGATATTCTGGAACATTTGACAAAAAAAGATATGGAA
GCTTTCATTCTTTATCTGCGGGAGCGTCCCCTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAAACCACCATCAA
CCGTACCCTCTCGGCCCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGATCAGGGTGAGCCCTACTTCT
ACCGCAATGTCATGAAGAAGGTGTCCACTAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCAGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACCATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACTCGTAAGGGTGGTAAACGGGACTCG
GTCAATGTGGCTGGTTTTGCTAAGCCCTATCTGGAAGCCTACATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCCTGTCCGAATACCGTGGTCTGCCCAATCGTATCGACGCTTCTTCTATTGAAAAAATGGTGGCTA
AGTACTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACATTGGCAACTCGTCTCTACGACGCTACC
AAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCACGCCAATACCCAGGTCACTGACCTCTACACCCATATCGTCAACGA
TGAGCAGAAAAATGCCTTGGATCAATTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831