Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JZY07_RS03200 Genome accession   NZ_CP071305
Coordinates   624371..624967 (+) Length   198 a.a.
NCBI ID   WP_024412159.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 619371..629967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS03185 (JZY07_03185) vicX 619653..620456 (+) 804 WP_044681030.1 MBL fold metallo-hydrolase Regulator
  JZY07_RS03190 (JZY07_03190) vga(F) 620813..622198 (+) 1386 WP_206974779.1 ABC-F type ribosomal protection protein Vga(F) -
  JZY07_RS03195 (JZY07_03195) pbp2b 622290..624362 (+) 2073 WP_024376693.1 penicillin-binding protein PBP2B -
  JZY07_RS03200 (JZY07_03200) recR 624371..624967 (+) 597 WP_024412159.1 recombination mediator RecR Machinery gene
  JZY07_RS03205 (JZY07_03205) - 625072..626118 (+) 1047 WP_024399910.1 D-alanine--D-alanine ligase -
  JZY07_RS03210 (JZY07_03210) - 626357..626737 (+) 381 WP_024399911.1 OsmC family protein -
  JZY07_RS03215 (JZY07_03215) murF 626866..628227 (+) 1362 WP_024399912.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  JZY07_RS03220 (JZY07_03220) - 628318..629016 (+) 699 WP_012775213.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21635.76 Da        Isoelectric Point: 4.5456

>NTDB_id=476678 JZY07_RS03200 WP_024412159.1 624371..624967(+) (recR) [Streptococcus suis strain SC183]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDGINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=476678 JZY07_RS03200 WP_024412159.1 624371..624967(+) (recR) [Streptococcus suis strain SC183]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGGTATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATAAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49