Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ATM22_RS03710 Genome accession   NZ_CP060528
Coordinates   802067..802462 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain LM087     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 797067..807462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM22_RS03685 (ATM22_03655) - 798486..798890 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  ATM22_RS03690 (ATM22_03660) - 799039..799272 (+) 234 WP_002456242.1 DUF1146 family protein -
  ATM22_RS03695 (ATM22_03665) murA 799382..800647 (+) 1266 WP_002474608.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ATM22_RS03700 (ATM22_03670) fabZ 800681..801118 (+) 438 WP_002494218.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ATM22_RS03705 (ATM22_03675) - 801436..801876 (-) 441 WP_001829935.1 YwpF-like family protein -
  ATM22_RS03710 (ATM22_03680) ssb 802067..802462 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  ATM22_RS03715 (ATM22_03685) - 802849..803508 (+) 660 WP_002474611.1 transglycosylase family protein -
  ATM22_RS03720 (ATM22_03690) tenA 803793..804482 (+) 690 WP_002494217.1 thiaminase II -
  ATM22_RS03725 (ATM22_03695) thiD 804475..805296 (+) 822 WP_002494216.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ATM22_RS03730 (ATM22_03700) thiM 805289..806077 (+) 789 WP_002494215.1 hydroxyethylthiazole kinase -
  ATM22_RS03735 (ATM22_03705) thiE 806083..806721 (+) 639 WP_032603839.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=476595 ATM22_RS03710 WP_002457121.1 802067..802462(+) (ssb) [Staphylococcus epidermidis strain LM087]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=476595 ATM22_RS03710 WP_002457121.1 802067..802462(+) (ssb) [Staphylococcus epidermidis strain LM087]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTTGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733