Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J0G23_RS08080 Genome accession   NZ_CP071263
Coordinates   1652191..1652928 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MEI003     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647191..1657928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0G23_RS08065 (J0G23_08010) clpC 1647645..1650218 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  J0G23_RS08070 (J0G23_08015) yfiH 1650348..1651079 (-) 732 WP_024229262.1 purine nucleoside phosphorylase YfiH -
  J0G23_RS08075 (J0G23_08020) rluD 1651076..1652056 (-) 981 WP_024229261.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J0G23_RS08080 (J0G23_08025) comL 1652191..1652928 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J0G23_RS08085 (J0G23_08030) raiA 1653199..1653540 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J0G23_RS08090 (J0G23_08035) pheL 1653644..1653691 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J0G23_RS08095 (J0G23_08040) pheA 1653790..1654950 (+) 1161 WP_024229260.1 bifunctional chorismate mutase/prephenate dehydratase -
  J0G23_RS08100 (J0G23_08045) tyrA 1654993..1656114 (-) 1122 WP_000225210.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J0G23_RS08105 (J0G23_08050) aroF 1656125..1657195 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J0G23_RS08110 (J0G23_08055) yfiL 1657405..1657770 (+) 366 WP_001314943.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=476424 J0G23_RS08080 WP_000197686.1 1652191..1652928(+) (comL) [Escherichia coli strain MEI003]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=476424 J0G23_RS08080 WP_000197686.1 1652191..1652928(+) (comL) [Escherichia coli strain MEI003]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376