NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	H4B46_RS18695	Genome accession	NZ_CP060504
Coordinates	827226..828086 (+)	Length	286 a.a.
NCBI ID	WP_001152277.1	Uniprot ID	A0A009HWK1
Organism	Acinetobacter baumannii strain AbCTX9
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 822226..833086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4B46_RS03730 (H4B46_03730)	secG	822831..823160 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
H4B46_RS03735 (H4B46_03735)	tpiA	823173..823967 (-)	795	WP_000016942.1	triose-phosphate isomerase	-
H4B46_RS03740 (H4B46_03740)	pilB	824258..825970 (+)	1713	WP_001274988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H4B46_RS03745 (H4B46_03745)	pilC	826000..827226 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
H4B46_RS18695	pilD	827226..828086 (+)	861	WP_001152277.1	A24 family peptidase	Machinery gene
H4B46_RS03760 (H4B46_03755)	coaE	828088..828684 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
H4B46_RS03765 (H4B46_03760)	-	828681..829595 (-)	915	WP_024432290.1	DMT family transporter	-
H4B46_RS03770 (H4B46_03765)	rlmB	829631..830380 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H4B46_RS03775 (H4B46_03770)	-	830482..830808 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H4B46_RS03780 (H4B46_03775)	-	830885..832195 (-)	1311	WP_000753281.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32038.43 Da Isoelectric Point: 7.1041

                                >NTDB_id=476409 H4B46_RS18695 WP_001152277.1 827226..828086(+) (pilD) [Acinetobacter baumannii strain AbCTX9]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=476409 H4B46_RS18695 WP_001152277.1 827226..828086(+) (pilD) [Acinetobacter baumannii strain AbCTX9]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A009HWK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0476409