Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H4B46_RS15105 Genome accession   NZ_CP060504
Coordinates   3174426..3174806 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX9     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3169426..3179806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B46_RS15075 (H4B46_15000) tadA 3169545..3170048 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  H4B46_RS15080 (H4B46_15005) - 3170055..3171179 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H4B46_RS15085 (H4B46_15010) ung 3171176..3171889 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  H4B46_RS15090 (H4B46_15015) - 3171940..3172536 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  H4B46_RS15095 (H4B46_15020) gspK 3172766..3173725 (-) 960 WP_000301463.1 type II secretion system minor pseudopilin GspK -
  H4B46_RS15100 (H4B46_15025) xcpW 3173725..3174426 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H4B46_RS15105 (H4B46_15030) xcpV 3174426..3174806 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  H4B46_RS15110 (H4B46_15035) - 3174796..3175350 (-) 555 WP_000841373.1 type II secretion system protein -
  H4B46_RS15115 (H4B46_15040) - 3175360..3175968 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H4B46_RS15120 (H4B46_15045) - 3176006..3176779 (-) 774 WP_000497298.1 TatD family hydrolase -
  H4B46_RS15125 (H4B46_15050) - 3176797..3177138 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  H4B46_RS15130 (H4B46_15055) - 3177150..3178130 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  H4B46_RS15135 (H4B46_15060) kdsB 3178142..3178903 (-) 762 WP_000680694.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=476407 H4B46_RS15105 WP_000836911.1 3174426..3174806(-) (xcpV) [Acinetobacter baumannii strain AbCTX9]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=476407 H4B46_RS15105 WP_000836911.1 3174426..3174806(-) (xcpV) [Acinetobacter baumannii strain AbCTX9]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1