Detailed information NTG0476406

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: H4B46_RS15100
• Genome accession: NZ_CP060504
• Coordinates: 3173725..3174426 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain AbCTX9
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3168725..3179426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4B46_RS15070 (H4B46_14995)	-	3169032..3169475 (-)	444	WP_001246676.1	SRPBCC family protein	-
H4B46_RS15075 (H4B46_15000)	tadA	3169545..3170048 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
H4B46_RS15080 (H4B46_15005)	-	3170055..3171179 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
H4B46_RS15085 (H4B46_15010)	ung	3171176..3171889 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
H4B46_RS15090 (H4B46_15015)	-	3171940..3172536 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
H4B46_RS15095 (H4B46_15020)	gspK	3172766..3173725 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
H4B46_RS15100 (H4B46_15025)	xcpW	3173725..3174426 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
H4B46_RS15105 (H4B46_15030)	xcpV	3174426..3174806 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
H4B46_RS15110 (H4B46_15035)	-	3174796..3175350 (-)	555	WP_000841373.1	type II secretion system protein	-
H4B46_RS15115 (H4B46_15040)	-	3175360..3175968 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
H4B46_RS15120 (H4B46_15045)	-	3176006..3176779 (-)	774	WP_000497298.1	TatD family hydrolase	-
H4B46_RS15125 (H4B46_15050)	-	3176797..3177138 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
H4B46_RS15130 (H4B46_15055)	-	3177150..3178130 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
H4B46_RS15135 (H4B46_15060)	kdsB	3178142..3178903 (-)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=476406 H4B46_RS15100 WP_000594572.1 3173725..3174426(-) (xcpW) [Acinetobacter baumannii strain AbCTX9]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=476406 H4B46_RS15100 WP_000594572.1 3173725..3174426(-) (xcpW) [Acinetobacter baumannii strain AbCTX9]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991