Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H4B46_RS07430 Genome accession   NZ_CP060504
Coordinates   1583421..1584239 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AbCTX9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578421..1589239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B46_RS07395 (H4B46_07380) - 1579004..1579133 (-) 130 Protein_1434 hypothetical protein -
  H4B46_RS07400 (H4B46_07385) rpoZ 1579172..1579450 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H4B46_RS07405 (H4B46_07390) gmk 1579523..1580152 (-) 630 WP_000015937.1 guanylate kinase -
  H4B46_RS07410 (H4B46_07395) ispH 1580275..1581225 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H4B46_RS07415 (H4B46_07400) fimU 1581395..1581868 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  H4B46_RS07420 (H4B46_07405) pilV 1581862..1582422 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H4B46_RS07425 (H4B46_07410) pilW 1582423..1583424 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H4B46_RS07430 (H4B46_07415) pilX 1583421..1584239 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H4B46_RS07435 (H4B46_07420) pilY1 1584251..1588105 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  H4B46_RS07440 (H4B46_07425) - 1588118..1588601 (+) 484 Protein_1443 type IV pilin protein -
  H4B46_RS07445 (H4B46_07430) pilE 1588598..1589023 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=476394 H4B46_RS07430 WP_000149374.1 1583421..1584239(+) (pilX) [Acinetobacter baumannii strain AbCTX9]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=476394 H4B46_RS07430 WP_000149374.1 1583421..1584239(+) (pilX) [Acinetobacter baumannii strain AbCTX9]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993