Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   H4B46_RS07420 Genome accession   NZ_CP060504
Coordinates   1581862..1582422 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576862..1587422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4B46_RS07395 (H4B46_07380) - 1579004..1579133 (-) 130 Protein_1434 hypothetical protein -
  H4B46_RS07400 (H4B46_07385) rpoZ 1579172..1579450 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H4B46_RS07405 (H4B46_07390) gmk 1579523..1580152 (-) 630 WP_000015937.1 guanylate kinase -
  H4B46_RS07410 (H4B46_07395) ispH 1580275..1581225 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H4B46_RS07415 (H4B46_07400) fimU 1581395..1581868 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  H4B46_RS07420 (H4B46_07405) pilV 1581862..1582422 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H4B46_RS07425 (H4B46_07410) pilW 1582423..1583424 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H4B46_RS07430 (H4B46_07415) pilX 1583421..1584239 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=476392 H4B46_RS07420 WP_002194578.1 1581862..1582422(+) (pilV) [Acinetobacter baumannii strain AbCTX9]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=476392 H4B46_RS07420 WP_002194578.1 1581862..1582422(+) (pilV) [Acinetobacter baumannii strain AbCTX9]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGTCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414