Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J0G24_RS06435 Genome accession   NZ_CP071259
Coordinates   1304190..1304927 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MEI005     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1299190..1309927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0G24_RS06405 (J0G24_06330) yfiL 1299348..1299713 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  J0G24_RS06410 (J0G24_06335) aroF 1299923..1300993 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J0G24_RS06415 (J0G24_06340) tyrA 1301004..1302125 (+) 1122 WP_000225201.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J0G24_RS06420 (J0G24_06345) pheA 1302168..1303328 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  J0G24_RS06425 (J0G24_06350) pheL 1303427..1303474 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J0G24_RS06430 (J0G24_06355) raiA 1303578..1303919 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J0G24_RS06435 (J0G24_06360) comL 1304190..1304927 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J0G24_RS06440 (J0G24_06365) rluD 1305062..1306042 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J0G24_RS06445 (J0G24_06370) yfiH 1306039..1306770 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  J0G24_RS06450 (J0G24_06375) clpC 1306900..1309473 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=476347 J0G24_RS06435 WP_000197686.1 1304190..1304927(-) (comL) [Escherichia coli strain MEI005]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=476347 J0G24_RS06435 WP_000197686.1 1304190..1304927(-) (comL) [Escherichia coli strain MEI005]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376