Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H8S96_RS09015 Genome accession   NZ_CP060493
Coordinates   2153214..2155052 (-) Length   612 a.a.
NCBI ID   WP_059280436.1    Uniprot ID   -
Organism   Bifidobacterium longum strain BIM B-813D     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2148214..2160052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S96_RS09915 - 2148520..2148897 (+) 378 WP_012472100.1 hypothetical protein -
  H8S96_RS08990 (H8S96_08990) rsmI 2148924..2149934 (-) 1011 WP_015512102.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H8S96_RS09920 (H8S96_09000) - 2150392..2150502 (-) 111 WP_108912149.1 hypothetical protein -
  H8S96_RS09005 (H8S96_09005) - 2150515..2151933 (-) 1419 WP_041080942.1 MFS transporter -
  H8S96_RS09010 (H8S96_09010) - 2152015..2153061 (+) 1047 WP_015512103.1 FAD:protein FMN transferase -
  H8S96_RS09015 (H8S96_09015) rcrQ 2153214..2155052 (-) 1839 WP_059280436.1 ABC transporter ATP-binding protein Regulator
  H8S96_RS09020 (H8S96_09020) rcrP 2155267..2157138 (-) 1872 WP_011068647.1 ABC transporter ATP-binding protein Regulator
  H8S96_RS09025 (H8S96_09025) - 2157390..2157920 (-) 531 WP_011068645.1 MarR family winged helix-turn-helix transcriptional regulator -
  H8S96_RS09030 (H8S96_09030) - 2158282..2158875 (+) 594 WP_013582999.1 BRO family protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67029.42 Da        Isoelectric Point: 5.9871

>NTDB_id=476337 H8S96_RS09015 WP_059280436.1 2153214..2155052(-) (rcrQ) [Bifidobacterium longum strain BIM B-813D]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGKPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGKNYMGGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=476337 H8S96_RS09015 WP_059280436.1 2153214..2155052(-) (rcrQ) [Bifidobacterium longum strain BIM B-813D]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAACCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAAGCCGGTGATGAACTCG
GTCGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGCAGGCCCTACTCGGCAAGAACTACATGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGG
CGGTTCGATTTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCATGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.082

96.078

0.52