Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H8N04_RS09620 Genome accession   NZ_CP060491
Coordinates   1923589..1924575 (-) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WH39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918589..1929575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8N04_RS09595 (H8N04_09600) - 1918849..1919196 (-) 348 WP_001242102.1 hypothetical protein -
  H8N04_RS09600 (H8N04_09605) - 1919382..1919975 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  H8N04_RS09605 (H8N04_09610) - 1920079..1920444 (+) 366 WP_000214065.1 truncated hemoglobin YjbI -
  H8N04_RS09610 (H8N04_09615) yjbH 1920467..1921273 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  H8N04_RS09615 (H8N04_09620) pepF 1921733..1923541 (-) 1809 WP_000082731.1 oligoendopeptidase F -
  H8N04_RS09620 (H8N04_09625) coiA 1923589..1924575 (-) 987 WP_000959287.1 competence protein CoiA Machinery gene
  H8N04_RS09625 (H8N04_09630) mecA 1924696..1925415 (-) 720 WP_001217730.1 adaptor protein MecA -
  H8N04_RS09630 (H8N04_09635) spxA 1925786..1926181 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  H8N04_RS09635 (H8N04_09640) trpS 1926476..1927465 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  H8N04_RS09640 (H8N04_09645) opp4C 1927507..1928388 (-) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  H8N04_RS09645 (H8N04_09650) opp4B 1928400..1929362 (-) 963 WP_000593417.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=476324 H8N04_RS09620 WP_000959287.1 1923589..1924575(-) (coiA) [Staphylococcus aureus strain WH39]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=476324 H8N04_RS09620 WP_000959287.1 1923589..1924575(-) (coiA) [Staphylococcus aureus strain WH39]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979