Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H8N04_RS03880 Genome accession   NZ_CP060491
Coordinates   779446..779841 (+) Length   131 a.a.
NCBI ID   WP_048665209.1    Uniprot ID   -
Organism   Staphylococcus aureus strain WH39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 774446..784841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8N04_RS03850 (H8N04_03855) - 775704..776108 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  H8N04_RS03855 (H8N04_03860) - 776446..776538 (+) 93 WP_001790611.1 hypothetical protein -
  H8N04_RS03860 (H8N04_03865) - 776670..776903 (+) 234 WP_000384523.1 DUF1146 family protein -
  H8N04_RS03865 (H8N04_03870) murA 777014..778279 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  H8N04_RS03870 (H8N04_03875) fabZ 778313..778753 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  H8N04_RS03875 (H8N04_03880) - 778812..779252 (-) 441 WP_000846746.1 YwpF-like family protein -
  H8N04_RS03880 (H8N04_03885) ssb 779446..779841 (+) 396 WP_048665209.1 single-stranded DNA-binding protein Machinery gene
  H8N04_RS03885 (H8N04_03890) sceD 780230..780925 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  H8N04_RS03890 (H8N04_03895) tenA 781311..782000 (+) 690 WP_000396077.1 thiaminase II -
  H8N04_RS03895 (H8N04_03900) thiD 781993..782823 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H8N04_RS03900 (H8N04_03905) thiM 782807..783598 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  H8N04_RS03905 (H8N04_03910) thiE 783600..784241 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=476300 H8N04_RS03880 WP_048665209.1 779446..779841(+) (ssb) [Staphylococcus aureus strain WH39]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEIISDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=476300 H8N04_RS03880 WP_048665209.1 779446..779841(+) (ssb) [Staphylococcus aureus strain WH39]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTATCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985