Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H8Z70_RS05265 Genome accession   NZ_CP060460
Coordinates   1228949..1230343 (-) Length   464 a.a.
NCBI ID   WP_005930970.1    Uniprot ID   A0A0U5FKR9
Organism   Xanthomonas citri pv. citri strain DAR84832     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1228656..1250293 1228949..1230343 within 0


Gene organization within MGE regions


Location: 1228656..1250293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8Z70_RS05265 (H8Z70_05265) pilR 1228949..1230343 (-) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  H8Z70_RS05270 (H8Z70_05270) - 1230668..1232281 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  H8Z70_RS05275 (H8Z70_05275) sucC 1232513..1233682 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  H8Z70_RS05280 (H8Z70_05280) sucD 1233707..1234582 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  H8Z70_RS23430 - 1234702..1234851 (-) 150 WP_157380096.1 hypothetical protein -
  H8Z70_RS05290 (H8Z70_05290) - 1235139..1236254 (-) 1116 WP_011052122.1 IS1595 family transposase -
  H8Z70_RS05295 (H8Z70_05295) - 1236482..1236766 (-) 285 WP_016849322.1 hypothetical protein -
  H8Z70_RS05305 (H8Z70_05305) xopAI 1238097..1238987 (-) 891 WP_076605129.1 type III secretion system effector XopAI -
  H8Z70_RS05310 (H8Z70_05310) - 1239121..1240223 (-) 1103 Protein_1039 DNA-binding protein -
  H8Z70_RS05315 (H8Z70_05315) xopE 1240554..1241630 (-) 1077 WP_041471283.1 XopE/AvrPphe family type III secretion system effector -
  H8Z70_RS05320 (H8Z70_05320) - 1241764..1242847 (-) 1084 Protein_1041 DNA-binding protein -
  H8Z70_RS05325 (H8Z70_05325) - 1243040..1244313 (+) 1274 Protein_1042 site-specific integrase -
  H8Z70_RS05330 (H8Z70_05330) - 1244322..1247312 (+) 2991 WP_015472512.1 Tn3 family transposase -
  H8Z70_RS05335 (H8Z70_05335) - 1247445..1248722 (+) 1278 WP_005919631.1 lytic murein transglycosylase -
  H8Z70_RS05340 (H8Z70_05340) avrXacE2 1248807..1249877 (+) 1071 WP_011052114.1 type III secretion system effector avirulence protein AvrXacE2 -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50177.62 Da        Isoelectric Point: 6.5718

>NTDB_id=476247 H8Z70_RS05265 WP_005930970.1 1228949..1230343(-) (pilR) [Xanthomonas citri pv. citri strain DAR84832]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=476247 H8Z70_RS05265 WP_005930970.1 1228949..1230343(-) (pilR) [Xanthomonas citri pv. citri strain DAR84832]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U5FKR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491