Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H8Z74_RS16705 Genome accession   NZ_CP060453
Coordinates   3869398..3870792 (+) Length   464 a.a.
NCBI ID   WP_005930970.1    Uniprot ID   A0A0U5FKR9
Organism   Xanthomonas citri pv. citri strain DAR73909     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3864398..3875792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8Z74_RS16685 (H8Z74_16735) - 3864557..3865072 (-) 516 WP_011052123.1 hypothetical protein -
  H8Z74_RS16690 (H8Z74_16740) sucD 3865159..3866034 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  H8Z74_RS16695 (H8Z74_16745) sucC 3866059..3867228 (-) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  H8Z74_RS16700 (H8Z74_16750) - 3867460..3869073 (+) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  H8Z74_RS16705 (H8Z74_16755) pilR 3869398..3870792 (+) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  H8Z74_RS16710 (H8Z74_16760) - 3870997..3871164 (-) 168 WP_015463523.1 hypothetical protein -
  H8Z74_RS16715 (H8Z74_16765) pilB 3871296..3871415 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  H8Z74_RS16720 (H8Z74_16770) pilB 3871909..3873645 (-) 1737 WP_011052125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H8Z74_RS16725 (H8Z74_16775) - 3873709..3874164 (-) 456 WP_015463526.1 pilin -
  H8Z74_RS16730 (H8Z74_16780) - 3874274..3874714 (-) 441 WP_015471735.1 pilin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50177.62 Da        Isoelectric Point: 6.5718

>NTDB_id=476232 H8Z74_RS16705 WP_005930970.1 3869398..3870792(+) (pilR) [Xanthomonas citri pv. citri strain DAR73909]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=476232 H8Z74_RS16705 WP_005930970.1 3869398..3870792(+) (pilR) [Xanthomonas citri pv. citri strain DAR73909]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTTTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U5FKR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491