Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JYA70_RS09710 Genome accession   NZ_CP071102
Coordinates   1973025..1974137 (-) Length   370 a.a.
NCBI ID   WP_000774109.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CI/BAC/25/13/W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968025..1979137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA70_RS09700 (JYA70_001940) gyrA 1968375..1971044 (-) 2670 WP_000819096.1 DNA gyrase subunit A -
  JYA70_RS09705 (JYA70_001941) gyrB 1971081..1973015 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JYA70_RS09710 (JYA70_001942) recF 1973025..1974137 (-) 1113 WP_000774109.1 DNA replication/repair protein RecF Machinery gene
  JYA70_RS09715 (JYA70_001943) yaaA 1974134..1974379 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  JYA70_RS09720 (JYA70_001944) dnaN 1974760..1975893 (-) 1134 WP_000970371.1 DNA polymerase III subunit beta -
  JYA70_RS09725 (JYA70_001945) dnaA 1976171..1977532 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  JYA70_RS09730 (JYA70_001946) rpmH 1978263..1978400 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  JYA70_RS09735 (JYA70_001947) rnpA 1978521..1978874 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42415.43 Da        Isoelectric Point: 6.4362

>NTDB_id=476219 JYA70_RS09710 WP_000774109.1 1973025..1974137(-) (recF) [Staphylococcus aureus strain CI/BAC/25/13/W]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHINVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=476219 JYA70_RS09710 WP_000774109.1 1973025..1974137(-) (recF) [Staphylococcus aureus strain CI/BAC/25/13/W]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACATCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497